Files in d3b-center/annoFuse
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
.Rbuildignore
.github/ISSUE_TEMPLATE/data-question.md
.github/ISSUE_TEMPLATE/feature-request.md
.github/ISSUE_TEMPLATE/report-issue.md
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/.DS_Store
R/.Rapp.history
R/aggregate_fusion_calls.R
R/annoFuse-pkg.R
R/annoFuse-utils.R
R/annoFuse_single_sample.R
R/annotate_fusion_calls.R
R/called_by_n_callers.R
R/expression_filter_fusion.R
R/fusion_driver.R
R/fusion_filtering_QC.R
R/fusion_multifused.R
R/fusion_standardization.R
R/get_Pfam_domain.R
R/groupcount_fusion_calls.R
R/plot_breakpoints.R
R/plot_recurrent_fusions.R
R/plot_recurrent_genes.R
R/plot_summary.R
R/reportFuse.R
R/samplecount_fusion_calls.R
R/shinyFuse.R
R/theme_publication.R
R/zscored_annotation.R
README.md
annofuse.Rproj
inst/extdata/.DS_Store
inst/extdata/annoFuse_overview.txt
inst/extdata/content_about.md
inst/extdata/howto_datainput.md
inst/extdata/report_template_annoFuse.Rmd
inst/www/help_dataformats_minimalexample.png
man/.DS_Store
man/.Rapp.history
man/aggregate_fusion_calls.Rd
man/annoFuse-pkg.Rd
man/annoFuse_single_sample.Rd
man/annotate_fusion_calls.Rd
man/called_by_n_callers.Rd
man/expression_filter_fusion.Rd
man/fusion_driver.Rd
man/fusion_filtering_QC.Rd
man/fusion_multifused.Rd
man/fusion_standardization.Rd
man/get_Pfam_domain.Rd
man/groupcount_fusion_calls.Rd
man/plot_breakpoints.Rd
man/plot_recurrent_fusions.Rd
man/plot_recurrent_genes.Rd
man/plot_summary.Rd
man/read_arriba_calls.Rd
man/read_starfusion_calls.Rd
man/reportFuse.Rd
man/samplecount_fusion_calls.Rd
man/shape_output.Rd
man/shinyFuse.Rd
man/theme_publication.Rd
man/zscored_annotation.Rd
tests/testthat.R
tests/testthat/test-aggregate_fusion_calls.R
tests/testthat/test-annoFuse.R
tests/testthat/test-annoFuse_single_sample.R
tests/testthat/test-annotate_fusion_calls.R
tests/testthat/test-called_by_n_callers.R
tests/testthat/test-expression_filter_fusion.R
tests/testthat/test-fusion_driver.R
tests/testthat/test-fusion_filtering_QC.R
tests/testthat/test-fusion_multifused.R
tests/testthat/test-fusion_standardization.R
tests/testthat/test-get_Pfam_domain.R
tests/testthat/test-groupcount_fusion_calls.R
tests/testthat/test-plot_breakpoints.R
tests/testthat/test-plot_recurrent_fusions.R
tests/testthat/test-plot_recurrent_genes.R
tests/testthat/test-reportFuse.R
tests/testthat/test-samplecount_fusion_calls.R
tests/testthat/test-shinyFuse.R
tests/testthat/test-zscored_annotation.R
vignettes/.DS_Store
vignettes/.build.timestamp
vignettes/Figure_1.png
vignettes/Summary.pdf
vignettes/TCGA_validation.Rmd
vignettes/putative_driver_filtering.Rmd
vignettes/singleSampleRun.Rmd
