called_by_n_callers: Function to identify fusions called by at least n callers

In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Function to identify fusions called by at least n callers

Description

Function to identify fusions called by at least n callers

Usage

called_by_n_callers(standardFusioncalls, numCaller)

Arguments

standardFusioncalls	A dataframe from star fusion or arriba standardized to run through the filtering steps
numCaller	Least number of callers that have the fusion

Value

Fusions called by n callers

Examples

out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
sfc_called <- called_by_n_callers(sfc, numCaller = 2)

d3b-center/annoFuse documentation built on Feb. 21, 2023, 1:06 a.m.