samplecount_fusion_calls: Function to identify fusions called in n samples

Description Usage Arguments Value Examples

View source: R/samplecount_fusion_calls.R

Description

Function to identify fusions called in n samples

Usage

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samplecount_fusion_calls(standardFusioncalls, numSample = 1, group)

Arguments

standardFusioncalls

A dataframe from star fusion or arriba standardized to run through the filtering steps

numSample

Least number of samples per group that have the fusion. Defaults to 1.

group

column name for grouping variable

Value

Fusions found in atleast n samples

Examples

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out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
samplecount_fusion_calls(sfc, group = "Kids_First_Participant_ID")

d3b-center/annoFuse documentation built on March 11, 2021, 9:05 p.m.