samplecount_fusion_calls: Function to identify fusions called in n samples

In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Function to identify fusions called in n samples

Description

Function to identify fusions called in n samples

Usage

samplecount_fusion_calls(standardFusioncalls, numSample = 1, group)

Arguments

standardFusioncalls	A dataframe from star fusion or arriba standardized to run through the filtering steps
numSample	Least number of samples per group that have the fusion. Defaults to 1.
group	column name for grouping variable

Value

Fusions found in atleast n samples

Examples

out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
samplecount_fusion_calls(sfc, group = "Kids_First_Participant_ID")

d3b-center/annoFuse documentation built on Feb. 21, 2023, 1:06 a.m.