plot_summary: Function to annotate fusion calls

In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Function to annotate fusion calls

Description

Function to annotate fusion calls

Usage

plot_summary(standardFusioncalls, groupby, outputpdffile, base_size = 20)

Arguments

standardFusioncalls	A dataframe from star fusion or arriba standardized to run through the filtering steps
groupby	column name with grouping variables
outputpdffile	Filename to plot image - optional, if not specified, the plot is simply generated
base_size	size for text in plots, defalt 20 for pdf outputs

Value

A ggplot object containing a summary of the standardized fusion calls

Examples

out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse, stringsAsFactors = FALSE)
plot_summary(sfc, groupby = "Fusion_Type")

d3b-center/annoFuse documentation built on Oct. 2, 2024, 4:17 a.m.