groupcount_fusion_calls: Function to identify fusions called by at least n callers

Description Usage Arguments Value Examples

View source: R/groupcount_fusion_calls.R

Description

Function to identify fusions called by at least n callers

Usage

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groupcount_fusion_calls(standardFusioncalls, group, numGroup)

Arguments

standardFusioncalls

A dataframe from star fusion or arriba standardized to run through the filtering steps

group

column name in input standard fusion calls that should be used to identify subset the sample belongs to in the cohort

numGroup

Least number of groups that have the fusion to categories as false call in cohort

Value

Fusions found in more than n groups in cohort

Examples

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out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
sfc_groupcount <- groupcount_fusion_calls(sfc, group = "Sample", 1)

d3b-center/annoFuse documentation built on March 11, 2021, 9:05 p.m.