groupcount_fusion_calls: Function to identify fusions called by at least n callers

In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Function to identify fusions called by at least n callers

Description

Function to identify fusions called by at least n callers

Usage

groupcount_fusion_calls(standardFusioncalls, group, numGroup)

Arguments

standardFusioncalls	A dataframe from star fusion or arriba standardized to run through the filtering steps
group	column name in input standard fusion calls that should be used to identify subset the sample belongs to in the cohort
numGroup	Least number of groups that have the fusion to categories as false call in cohort

Value

Fusions found in more than n groups in cohort

Examples

out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
sfc_groupcount <- groupcount_fusion_calls(sfc, group = "Sample", 1)

d3b-center/annoFuse documentation built on Feb. 21, 2023, 1:06 a.m.