fusion_multifused: Function to identify fusions called by at least n callers

Description Usage Arguments Value Examples

View source: R/fusion_multifused.R

Description

Function to identify fusions called by at least n callers

Usage

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fusion_multifused(standardFusioncalls, limitMultiFused = 3)

Arguments

standardFusioncalls

A dataframe from star fusion or arriba standardized to run through the filtering steps

limitMultiFused

Integer to identify a limit of times a gene can be fused per sample

Value

Fusions where gene partner(s) is multifused per sample

Examples

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out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse, stringsAsFactors = FALSE)
sfc_multifused <- fusion_multifused(sfc, limitMultiFused = 2)

d3b-center/annoFuse documentation built on March 11, 2021, 9:05 p.m.