fusion_multifused: Function to identify fusions called by at least n callers

In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Function to identify fusions called by at least n callers

Description

Function to identify fusions called by at least n callers

Usage

fusion_multifused(standardFusioncalls, limitMultiFused = 3)

Arguments

standardFusioncalls	A dataframe from star fusion or arriba standardized to run through the filtering steps
limitMultiFused	Integer to identify a limit of times a gene can be fused per sample

Value

Fusions where gene partner(s) is multifused per sample

Examples

out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse, stringsAsFactors = FALSE)
sfc_multifused <- fusion_multifused(sfc, limitMultiFused = 2)

d3b-center/annoFuse documentation built on Oct. 2, 2024, 4:17 a.m.