Man pages for d3b-center/annoFuse
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
| aggregate_fusion_calls | Function to aggregate Caller and read support per fusions... |
| annoFuse-pkg | annoFuse |
| annoFuse_single_sample | Single Sample use for annoFuse |
| annotate_fusion_calls | Function to annotate fusion calls |
| called_by_n_callers | Function to identify fusions called by at least n callers |
| expression_filter_fusion | Expression filtering with user provided expression Matrix and... |
| fusion_driver | Filter standardized fusion calls for driver fusions |
| fusion_filtering_QC | Filters standardized fusion calls to remove artifacts and... |
| fusion_multifused | Function to identify fusions called by at least n callers |
| fusion_standardization | Standardizes fusion calls |
| get_Pfam_domain | Function to annotate fusion calls with domain terms |
| groupcount_fusion_calls | Function to identify fusions called by at least n callers |
| plot_breakpoints | Function to plot breakpoints of a gene in a sample/cohort |
| plot_recurrent_fusions | Function to plot recurrent fused genes |
| plot_recurrent_genes | Function to plot recurrent fused genes |
| plot_summary | Function to annotate fusion calls |
| read_arriba_calls | Read in fusion calls from Arriba v1.1.0 |
| read_starfusion_calls | Read in fusion calls from STAR-Fusion 1.5.0 |
| reportFuse | reportFuse |
| samplecount_fusion_calls | Function to identify fusions called in n samples |
| shape_output | function used by STARFUSION and ARRIBA to shape the final... |
| shinyFuse | shinyFuse |
| theme_publication | theme_publication for plots Publication quality images for... |
| zscored_annotation | Annotates standardizes fusion calls calls with zscored... |
