Files in daattali/ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web

.Rbuildignore

.github/.gitignore

.github/FUNDING.yml

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

Makefile

NAMESPACE

NEWS.md R/aaa.R R/concentration.R R/ddpcr-package.R R/empty.R R/failures.R R/ignoreme.R R/launch.R R/outliers.R R/pipe.R R/plate-attribs.R R/plate-extend.R R/plate-print.R R/plate-utils.R R/plate.R R/plot.R R/pnpp_experiment-calculate_neg_freq.R R/pnpp_experiment-classify.R R/pnpp_experiment-empty.R R/pnpp_experiment-failures.R R/pnpp_experiment-filled.R R/pnpp_experiment-plot.R R/pnpp_experiment-reclassify.R R/read.R R/sample_data.R R/save_load.R R/subset.R R/type-custom_thresholds.R R/type-ddpcr_plate.R R/type-fam_positive_pnpp.R R/type-hex_positive_pnpp.R R/type-pnpp_experiment.R R/type-wildtype_mutant_pnpp.R R/utils.R R/zzz.R README.md cran-comments.md

inst/sample_data/empty_plate.rds

inst/sample_data/large/large.rds

inst/sample_data/read_complex/diffname_C03_Amplitude.csv

inst/sample_data/read_complex/expected_data.csv

inst/sample_data/read_complex/metadata.csv

inst/sample_data/read_complex/test_A01_Amplitude.csv

inst/sample_data/read_complex/test_B02_Amplitude.csv

inst/sample_data/read_quant/quant.csv

inst/sample_data/read_quant/quant_A01_Amplitude.csv

inst/sample_data/read_quant/quant_A02_Amplitude.csv

inst/sample_data/read_quant/quant_B01_Amplitude.csv

inst/sample_data/read_quant/quant_B02_Amplitude.csv

inst/sample_data/read_quant/quant_C01_Amplitude.csv

inst/sample_data/read_quant/quant_C02_Amplitude.csv

inst/sample_data/read_simple/expected_data.csv

inst/sample_data/read_simple/test.csv

inst/sample_data/read_simple/test_A01_Amplitude.csv

inst/sample_data/read_simple/test_B02_Amplitude.csv

inst/sample_data/read_v174/expected_data.csv

inst/sample_data/read_v174/test.csv

inst/sample_data/read_v174/test_A01_Amplitude.csv

inst/sample_data/read_v174/test_B02_Amplitude.csv

inst/sample_data/small/A05_filled.csv

inst/sample_data/small/analyzed.rds

inst/sample_data/small/analyzed_pnpp.rds

inst/sample_data/small/small.csv

inst/sample_data/small/small.rds

inst/sample_data/small/small_A01_Amplitude.csv

inst/sample_data/small/small_A05_Amplitude.csv

inst/sample_data/small/small_C01_Amplitude.csv

inst/sample_data/small/small_C05_Amplitude.csv

inst/sample_data/small/small_F05_Amplitude.csv

inst/shiny/server.R inst/shiny/server/helpers.R inst/shiny/server/tab-analyze.R inst/shiny/server/tab-dataset.R inst/shiny/server/tab-results.R inst/shiny/server/tab-settings.R inst/shiny/text/about.md inst/shiny/ui.R inst/shiny/ui/header.R inst/shiny/ui/helpers.R inst/shiny/ui/tab-about.R inst/shiny/ui/tab-analyze.R inst/shiny/ui/tab-dataset.R inst/shiny/ui/tab-results.R inst/shiny/ui/tab-settings.R

inst/shiny/www/ajax-loader-bar.gif

inst/shiny/www/ajax-loader.gif

inst/shiny/www/ddpcr.js

inst/shiny/www/fampositive.png

inst/shiny/www/favicon.ico

inst/shiny/www/hexpositive.png

inst/shiny/www/style.css

inst/vignette_files/overview_files/figure-markdown_strict/crosshairresults-1.png

inst/vignette_files/overview_files/figure-markdown_strict/plotcrosshair-1.png

inst/vignette_files/overview_files/figure-markdown_strict/plotparams-1.png

inst/vignette_files/overview_files/figure-markdown_strict/plotparams-2.png

inst/vignette_files/overview_files/figure-markdown_strict/plotraw-1.png

inst/vignette_files/overview_files/figure-markdown_strict/plotsimple-1.png

inst/vignette_files/overview_files/figure-markdown_strict/pnppplot-1.png

inst/vignette_files/overview_files/figure-markdown_strict/quickstart-1.png

inst/vignette_files/overview_files/figure-markdown_strict/quickstart-2.png

inst/vignettes-supp/algorithms-imgs.R

inst/vignettes-supp/ddpcr-example.png

inst/vignettes-supp/empty.png

inst/vignettes-supp/ex-subset.png

inst/vignettes-supp/gating.png

inst/vignettes-supp/outliers.png

inst/vignettes-supp/pnpp-simple-result.png

inst/vignettes-supp/supported-exp-types.png

inst/vignettes-supp/vignette_data_B06_Amplitude.csv

daattali/ddpcr documentation built on March 27, 2024, 6:50 a.m.

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daattali/ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web

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Analysis and Visualization of Droplet Digital PCR in R and on the Web

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daattali/ddpcr Analysis and Visualization of Droplet Digital PCR in R and on the Web

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daattali/ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web

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Analysis and Visualization of Droplet Digital PCR in R and on the Web