remove_failures: Analysis step: Remove failed wells
In daattali/ddpcr: Analysis and Visualization of Droplet Digital PCR in R and on the Web
remove_failures R Documentation
Analysis step: Remove failed wells
Description
Check if any wells have failed the ddPCR experiment by checking a series
of quality control metrics. If any well is deemed as a failure, all the droplets
in that well will be assigned to the FAILED cluster.
See the README for
more information about the algorithm used to find failed wells.
Usage
remove_failures(plate)
Arguments
plate
A ddPCR plate.
Details
This function is recommended to be run as part of an analysis pipeline (ie.
within the analyze function) rather than being called
directly.
Value
A ddPCR plate with the droplets in failed wells marked as failed. The plate's
metadata will have a new variable success which will be FALSE
for any failed well and TRUE for all others.
Note
This is an S3 generic, which means that different ddPCR plate types can
implement this function differently.
See the README for
more information on how to implement custom ddPCR plate types.
See Also
analyze
is_well_success
daattali/ddpcr documentation built on March 27, 2024, 6:50 a.m.
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| remove_failures | R Documentation |
Analysis step: Remove failed wells
Description
Check if any wells have failed the ddPCR experiment by checking a series
of quality control metrics. If any well is deemed as a failure, all the droplets
in that well will be assigned to the FAILED cluster.
See the README for
more information about the algorithm used to find failed wells.
Usage
remove_failures(plate)
Arguments
plate |
A ddPCR plate. |
Details
This function is recommended to be run as part of an analysis pipeline (ie.
within the analyze function) rather than being called
directly.
Value
A ddPCR plate with the droplets in failed wells marked as failed. The plate's
metadata will have a new variable success which will be FALSE
for any failed well and TRUE for all others.
Note
This is an S3 generic, which means that different ddPCR plate types can implement this function differently. See the README for more information on how to implement custom ddPCR plate types.
See Also
analyze
is_well_success
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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