dbailleul/RClone: Partially Clonal Populations Analysis
R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <https://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).
Getting started
Browse package contents
Package details |
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| Author | Sophie Arnaud-Haond [aut], Diane Bailleul [aut, cre], Solenn Stoeckel [ctb] |
| Maintainer | Diane Bailleul <diane.bailleul.pro@gmail.com> |
| License | GPL (>=2.0) |
| Version | 1.0.3 |
| URL | https://github.com/dbailleul/RClone |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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