Description Usage Arguments Details Value Author(s) References See Also Examples
freq_RR
returns a table of allelic frequencies computed with or
without Round-Robin method.
1 |
data1 |
a |
haploid |
logical, option, |
vecpop |
vector, option, |
genet |
option, if |
RR |
option, if |
Round-Robin method (Parks & Werth 1993) is a sub-sampling approach which avoids
overestimation of rare alleles.
Each locus frequency is estimated on MLG lists constructed without the locus
sampled.
This calculation is repeated for all loci.
a table (one population) or a list of tables (several populations) with three columns:
a first column with the number of the locus considered (written as "locus_1"),
a second column with the list of the unique alleles of the locus,
a last column with the frequency of the allele in row.
Creator/Author: Diane Bailleul <diane.bailleul.pro@gmail.com>
Author: Sophie Arnaud-Haond <sophie.arnaud@ifremer.fr>
Contributor: Solenn Stoeckel
The R implementation of RClone
was written by Diane Bailleul.
The design was inspired by GenClone program described in Arnaud-Haond & Belkhir (2007).
Parks & Werth, 1993, A study of spatial features of clones in a population of Bracken fern, Pteridium aquilinum (Dennstaedtiaceae). Arnaud-Haond et al., 2007, Standardizing methods to address clonality in population studies.
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