Description Usage Arguments Details Value Author(s) References See Also Examples
clonal_sub
computes the clonal subrange analysis with spatial distance
intervals and the corresponding probabilities of clonal identity.
1 2 
data1 
a 
coords 
a table with coordinates of every units in 
vecpop 
vector, option, 
listMLL 
option, a custom list of MLL. 
class1 
option, if 
class2 
option, if 
d 
numeric, number of distance classes. 
vecdist 
option, a custom vector distance intervals to construct distance classes. 
By default, d = 10
and clonal_sub
computes 10 equidistant
distance classes for all the ramets pairs.
The function proposes 3 others options:
class1
fixing d
equidistant classes,
class2
fixing d
distance classes with the same
number of units pairs,
vecdist != NULL
allowing the user to give a vector,
vecdist
of intervals. vecdist
must start with 0 and
end with max(dist)
.
A list of:
clonal_sub_res 
clonal subrange, i.e. maximum distance between two units sharing the same MLG/MLL (Alberto et al., 2005) 
clonal_sub_tab 
table of results with, per class, the number of units pairs,
the min, max and mean distances between pairs and 
For multipopulation data1
, a list of lists per population.
Creator/Author: Diane Bailleul <[email protected]>
Author: Sophie ArnaudHaond <[email protected]>
Contributor: Solenn Stoeckel
The R implementation of RClone
was written by Diane Bailleul.
The design was inspired by GenClone program described in ArnaudHaond & Belkhir (2007).
Alberto et al., 2005, Spatial genetic structure, neighbourhood size and clonal subrange in seagrass (Cymodocea nodosa) populations.
ArnaudHaond et al., 2007, Standardizing methods to address clonality in population studies.
autocorrelation
, agg_index
and edge_effect
1 2 3 4 5 6 7  data(posidonia)
data(coord_posidonia)
distGC < c(0,10,15,20,30,50,70,76.0411073)
clonal_sub(posidonia, coords = coord_posidonia)
clonal_sub(posidonia, coords = coord_posidonia, vecdist = distGC)

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