convert_GC: File conversion into RClone files
In dbailleul/RClone: Partially Clonal Populations Analysis

Description Usage Arguments Value Author(s) See Also Examples

convert_GC helps files conversion into RClone format.

RClone functions work on tables with one allele per column.

convert_GC converts tables with one locus per column into tables with one allele per column, handling separation elements.

convert_GC also sorts alleles at a locus per increasing order.

1	convert_GC(data1, num, ele)

`data1`	a table, with units in row and one locus per column.
`num`	numeric, the length of each allele.
`ele`	option, the alleles separator in the original table.

a table with one allele per column, alleles sorted by increasing order.

Creator/Author: Diane Bailleul <diane.bailleul.pro@gmail.com>
Author: Sophie Arnaud-Haond <sophie.arnaud@ifremer.fr>
Contributor: Solenn Stoeckel

The R implementation of RClone was written by Diane Bailleul.

The design was inspired by GenClone program described in Arnaud-Haond & Belkhir (2007).

sort_all for tables with one allele per column.
transcript_GC uses convert_GC as internal function.

test <- matrix("232/231", ncol = 2, nrow = 2)
convert_GC(test, 3, "/") 
#"232" is a allele of length 3 and "/" is the separator.

test2 <- matrix("192235", ncol = 2, nrow = 2)
convert_GC(test2, 3) 
#no separator

#with data1, a genind object from adegenet:
#test <- genind2df(data1)
#convert_GC(test, 3, "/")