Description Usage Arguments Details Value Note Author(s) References See Also Examples
transcript_GC
allows conversion from GenClone files to RClone
files.
1 | transcript_GC(obj, ele, num1, num2, num3)
|
obj |
a |
ele |
option, separator element for import. |
num1 |
numeric, the number of loci. |
num2 |
numeric, the ploidy level. 2 for diploids and 1 for haploids. |
num3 |
numeric, the length of each allele. |
GenClone files are generally .txt
files named infile.txt
.
You must save it as .csv
file with ";"
as separators and, if
necessary, change ","
by "."
.
transcript_GC
returns a list of:
data_genet |
a table of genotypes, one allele per column and one unit per row, |
data_coord |
a table of x/y coordinates, |
names_loci |
a vector of names of the loci, |
names_units |
a vector of names of the units. |
transcript_GC
works only with infile files full of informations
(loci names, ploidy names, etc.).
Creator/Author: Diane Bailleul <diane.bailleul.pro@gmail.com>
Author: Sophie Arnaud-Haond <sophie.arnaud@ifremer.fr>
Contributor: Solenn Stoeckel
The R implementation of RClone
was written by Diane Bailleul.
The design was inspired by GenClone program described in Arnaud-Haond & Belkhir (2007).
Arnaud-Haond et al., 2007, Standardizing methods to address clonality in population studies.
sort_all
for sorting users tables with one allele per column.
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