tests/testthat/test-fmt.R

context("Format Tests")


test_that("fmt1: value() function sets class and levels as expected", {
  
  
  res <- c("Label A", "Label B", "Other")
  
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"), 
                condition(TRUE, "Other"))
  
  expect_equal(class(fmt1), "fmt")
  expect_equal(levels(fmt1), res)
  
})

test_that("fmt2: ordered conditions set levels as expected", {
  
  
  res <- c("Label B", "Other", "Label A")
  
  
  fmt1 <- value(condition(x == "A", "Label A", order = 3),
                condition(x == "B", "Label B", order = 1), 
                condition(TRUE, "Other", order = 2))
  
  
  expect_equal(class(fmt1), "fmt")
  expect_equal(levels(fmt1), res)
  
})



test_that("fmt3: a format object can be applied to a vector.", {
  
  
  res <- c("Label A", "Label B", "Other", "Label B")
  
  v1 <- c("A", "B", "C", "B")
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"), 
                condition(TRUE, "Other"))
  
  
  a1 <- fapply(v1, fmt1)
  expect_equal(a1 , res)
  
  
  v2 <- c(1, 2, 3, 2)
  
  fmt2 <- value(condition(x == 1, "Label A"),
                condition(x == 2, "Label B"), 
                condition(TRUE, "Other"))
  
  
  a2 <- fapply(v2, fmt2)
  expect_equal(a2, res)
  
  
  fmt3 <- value(condition(x <= 1, "Label A"),
                condition(x > 1 & x <= 2, "Label B"), 
                condition(TRUE, "Other"))
  
  
  a3 <- fapply(v2, fmt3)
  expect_equal(a3, res)
  
  
  fmt4 <- value(condition(x == "A", 1),
                condition(x == "B", 2),
                condition(TRUE, 3))
  
  a4 <- fapply(v1, fmt4)
  expect_equal(a4,  c(1, 2, 3, 2))
  
  
  fmt5 <- value(condition(x == "A", 1.2),
                condition(x == "B", 2.3),
                condition(TRUE, 3.4))
  
  a5 <- fapply(v1, fmt5)
  expect_equal(a5,  c(1.2, 2.3, 3.4, 2.3))
  
  
  
  fmt6 <- value(condition(x == "A", as.Date("2021-04-01")),
                condition(x == "B", as.Date("2021-04-02")),
                condition(TRUE, as.Date("2021-04-03")))
  
  fmt6[[1]]$label
  
  a6 <- fapply(v1, fmt6)
  expect_equal(a6,  c(18718, 18719, 18720, 18719))
  #expect_equal(class(a6), "Date")
  
})

# test_that("labels() function works as expected", {
#   
#   
#   res <- c("Label A", "Label B", "Other")
#   
#   
#   fmt1 <- value(condition(x == "A", "Label A"),
#                 condition(x == "B", "Label B"), 
#                 condition(TRUE, "Other"))
#   
#   
#   lbls <- labels(fmt1)
# 
#   expect_equal(lbls, res)
#   
# })


test_that("fmt4: order parameter works as expected", {
  
  
  res <- c("Label B", "Label A","Other")
  
  
  fmt1 <- value(condition(x == "A", "Label A", order = 2),
                condition(x == "B", "Label B", order = 1), 
                condition(TRUE, "Other"))
  
  
  lbls <- labels(fmt1)
  
  expect_equal(lbls, res)
  
})

test_that("fmt5: invalid order parameter generates error.", {
  
  
  res <- c("Label B", "Label A","Other")
  
  
  expect_error(value(condition(x == "A", "Label A", order = 6),
                condition(x == "B", "Label B", order = 1), 
                condition(TRUE, "Other")))
  
  
  
})


test_that("fmt6: unassigned and NA values in value() function fall through unaltered.", {
  
  v1 <- c("A", "B", "C", "B", NA, 1)
  res <- c("Label A", "Label B", "C", "Label B", NA, "1")
  
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"))
  
  
  fmtd <- fapply(v1, fmt1)
  
  expect_equal(fapply(v1, fmt1), res)

  
})

test_that("fmt7: as.data.frame.fmt function works as expected", {
  
  
  fmt1 <- value(condition(x == "A", "Label A", order = 2),
                condition(x == "B", "Label B", order = 1), 
                condition(TRUE, "Other"))
  
  ex <- as.data.frame(fmt1)
  
  expect_equal(nrow(ex), 3)
  expect_equal(as.character(ex[1, "Order"]), "2")
  expect_equal(as.character(ex[3, "Label"]), "Other")
  
})


test_that("fmt8: as.fmt.data.frame function works as expected", {
  
  o <- c(2, 1, NA)
  e <- c("x == \"A\"", "x == \"B\"", "TRUE")
  l <- c("Label A", "Label B", "Other")
  
  dat <- data.frame(Name = "Fork", Type = "U", 
                    Expression = e, Label = l, Order = o)

  
  fmt <- as.fmt(dat)

  
  v1 <- c("A", "B", "C", "B")
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(res[1], "Label A")
  expect_equal(res[2], "Label B")
  expect_equal(res[3], "Other")
  
})

test_that("fmt9: as.fmt.data.frame function with NA order works as expected", {
  
  o <- c(NA, NA, NA)
  e <- c("x == \"A\"", "x == \"B\"", "TRUE")
  l <- c("Label A", "Label B", "Other")
  
  dat <- data.frame(Name = "Fork", Type = "U", 
                    Expression = e, Label = l, Order = o)
  
  
  fmt <- as.fmt(dat)
  
  
  v1 <- c("A", "B", "C", "B")
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(res[1], "Label A")
  expect_equal(res[2], "Label B")
  expect_equal(res[3], "Other")
  
})

test_that("fmt10: print.fmt function works as expected", {
  
  
  fmt1 <- value(condition(x == "A", "Label A", order = 2),
                condition(x == "B", "Label B", order = 1), 
                condition(TRUE, "Other"))
  
  
  expect_output(print(fmt1, verbose = TRUE))
  expect_output(print(fmt1))
  
  
})


test_that("fmt11: as.fmt.data.frame function works as expected with caps.", {
  
  o <- c(2, 1, NA)
  e <- c("x == \"A\"", "x == \"B\"", "TRUE")
  l <- c("Label A", "Label B", "Other")
  
  dat <- data.frame(NAME = "Fork", TyPE = "U", 
                    expression = e, LaBel = l, OrdeR = o)

  fmt <- as.fmt(dat)
  
  
  v1 <- c("A", "B", "C", "B")
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(res[1], "Label A")
  expect_equal(res[2], "Label B")
  expect_equal(res[3], "Other")
  
})


test_that("fmt12: values function works with range.", {
  
  
  res <- c("Label A", "Label B", "Other", "Label B")
  
  v1 <- c(22, 26.3, 23, 25)


  fmt3 <- value(condition(x > 22 & x <= 25, "Label B"), 
                condition(TRUE, "Other"))
  
  
  a3 <- fapply(v1, fmt3)
  expect_equal(a3, c("Other", "Other", "Label B", "Label B"))
  
})

test_that("fmt13: fmt parameter checks work as expected.", {
  
  expect_error(value())
  expect_error(as.data.frame.fmt("fork"))
  expect_error(as.fmt.data.frame("fork"))
  expect_error(print.fmt("fork"))
  
  
})

test_that("fmt14: as.fmt.data.frame function works as expected with numeric labels", {
  
  o <- c(2, 1, NA)
  e <- c("x == \"A\"", "x == \"B\"", "TRUE")
  l <- c(1, 2, NA)
  
  dat <- data.frame(Name = "Fork", Type = "U", 
                    Expression = e, Label = l, Order = o)
  
  
  fmt <- as.fmt(dat)
  
  
  v1 <- c("A", "B", "C", "B")
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(res[1], 1)
  expect_equal(res[2], 2)
  expect_equal(is.na(res[3]), TRUE)
  
})

test_that("fmt15: NA values in numeric format fall through unaltered.", {

  v1 <- c(1.287, 2.3847, 3.2847, 4.847, NA, 1.387)

  fmtd <- fapply(v1, "%.1f")

  expect_equal(is.na(fmtd[5]) , TRUE)


})


test_that("fmt16: NA values in date format fall through unaltered.", {

  v1 <- c(Sys.Date(), Sys.Date() + 2, NA, Sys.Date() + 3)

  fmtd <- fapply(v1, "%m %d %Y")

  expect_equal(is.na(fmtd[3]) , TRUE)


})



test_that("fmt17: fapply works with user-defined format on factor.", {
  
  v1 <- factor(c("A", "B", "C", "A"))
  
  
  fmt <- value(condition(x == "A", "Label A"),
               condition(x == "B", "Label B"),
               condition(TRUE, "Other"))
  
  fmtd <- fapply(v1, fmt)
  
  expect_equal(fmtd , c("Label A", "Label B", "Other", "Label A"))
  
  
})

# This goes to the console and can't be tested.
test_that("fmt18: log parameter works as expected.", {
  
  
  res <- c("Label A", "Label B", "Other", "Label B")
  
  v1 <- c("A", "B", "C", "B")
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"), 
                condition(TRUE, "Other"))
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"), 
                condition(TRUE, "Other"), log = FALSE)
  
  expect_equal(TRUE, TRUE)
  
  
})


test_that("fmt19: as.factor parameter works as expected.", {
  
  v1 <- c("A", "B", "C", "A")
  
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"),
                condition(TRUE, "Other"), as.factor = TRUE)
  
  # levels(fmt1)
  
  
  fmtd1 <- fapply(v1, fmt1)
  
  expect_equal(is.factor(fmtd1), TRUE)
  expect_equal(levels(fmtd1), c("Label A", "Label B", "Other"))
  
  
  fmt2 <- value(condition(x == "A", "Label A"),
               condition(x == "B", "Label B"),
               condition(TRUE, "Other"), as.factor = FALSE)
  
  fmtd2 <- fapply(v1, fmt2)
  
  expect_equal(is.factor(fmtd2) , FALSE)
  
  
  fmt3 <- value(condition(x == "A", "Label A", 2),
                condition(x == "B", "Label B", 3),
                condition(TRUE, "Other", 1), as.factor = TRUE)
  
  fmtd3 <- fapply(v1, fmt3)
  
  expect_equal(is.factor(fmtd3) , TRUE)
  expect_equal(levels(fmtd3), c("Other", "Label A", "Label B"))
  
  
})

test_that("fmt20: as.factor conversions works as expected.", {
  

  v1 <- c("A", "B", "C", "A")
  
  # Factor TRUE
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"),
                condition(TRUE, "Other"), as.factor = TRUE)
  
  ds1 <- as.data.frame(fmt1)
  
  expect_equal("Factor" %in% names(ds1), TRUE)
  
  
  fmt2 <- as.fmt(ds1)
  
  expect_equal(attr(fmt2, "as.factor"), TRUE)
  
  expect_equal(is.factor(fapply(v1, fmt1)), TRUE)
  
  # Factor FALSE
  
  fmt1 <- value(condition(x == "A", "Label A"),
                condition(x == "B", "Label B"),
                condition(TRUE, "Other"))
  
  ds1 <- as.data.frame(fmt1)
  
  expect_equal("Factor" %in% names(ds1), TRUE)
  
  
  fmt2 <- as.fmt(ds1)
  
  expect_equal(attr(fmt2, "as.factor"), FALSE)
  
  expect_equal(is.factor(fapply(v1, fmt1)), FALSE)
  
  
  
})


test_that("fmt21: as.fmt.data.frame function with no Format column works as expected", {
  
  o <- c(NA, NA, NA)
  e <- c("x == \"A\"", "x == \"B\"", "TRUE")
  l <- c("Label A", "Label B", "Other")
  
  dat <- data.frame(Name = "Fork", Type = "U", 
                    Expression = e, Label = l, Order = o)
  
  
  fmt <- as.fmt(dat)
  
  
  v1 <- c("A", "B", "C", "B")
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(is.factor(res), FALSE)
  
  
  fmt <- as.fmt(dat)
  
  dat$Factor<- TRUE
  
  fmt <- as.fmt(dat)
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(is.factor(res), TRUE)
  
  
  dat$Factor<- NA
  
  fmt <- as.fmt(dat)
  
  res <- fapply(v1, fmt)
  
  expect_equal(length(res), 4)
  expect_equal(is.factor(res), FALSE)
  

})
dbosak01/fmtr documentation built on May 11, 2024, 8:11 a.m.