dbottomly/HitWalker
Network-based variant prioriziation using functional assay scores

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Search the dbottomly/HitWalker package
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Functions
300
Source code
11
Man pages
24
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dbottomly/HitWalker: Network-based variant prioriziation using functional assay scores
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API

API for dbottomly/HitWalker
Network-based variant prioriziation using functional assay scores

Global functions
HitWalker Man page
HitWalker-package Man page
add.in.missing.nodes Man page
additionalIDs Man page
additionalIDs,priorDbParams-method Man page
additionalIDs<- Man page
additionalIDs<-,priorDbParams-method Man page
annotQuery Man page
annotQuery,priorDbParams-method Man page
annotQuery<- Man page
annotQuery<-,priorDbParams-method Man page
annotatedIGraph Man page
annotatedIGraph-class Man page
annotation Man page
annotation,annotatedIGraph-method Man page
annotation<- Man page
annotation<-,annotatedIGraph-method Man page
collapse.nodes.genes Man page
collapseChar Man page
collapseChar,graphDispParams-method Man page
collapseChar<- Man page
collapseChar<-,graphDispParams-method Man page
combScoreName Man page
combScoreName,priorDbParams-method Man page
combScoreName<- Man page
combScoreName<-,priorDbParams-method Man page
coreID Man page
coreID,priorDbParams-method Man page
coreID<- Man page
coreID<-,priorDbParams-method Man page
defaultBorder Man page
defaultBorder,graphDispParams-method Man page
defaultBorder<- Man page
defaultBorder<-,graphDispParams-method Man page
defaultColor Man page
defaultColor,graphDispParams-method Man page
defaultColor<- Man page
defaultColor<-,graphDispParams-method Man page
draw.graph Man page
draw.graph.variantPriorResult Man page
fileName Man page
fileName,graphDispParams-method Man page
fileName<- Man page
fileName<-,graphDispParams-method Man page
filter.variant.annots Man page
filterBestCategory Man page
filterBestCategory,variantFilter-method Man page
filterCategory Man page
filterCategory,variantFilter-method Man page
filterCollapseCol Man page
filterCollapseCol,variantFilter-method Man page
filterDta Man page
filterDta,variantFilter-method Man page
filterIgnoreCol Man page
filterIgnoreCol,variantFilter-method Man page
filterLabels Man page
filterLabels,variantFilter-method Man page
filterSep Man page
filterSep,variantFilter-method Man page
get.graph.sp Man page
get.hit.prots Man page
get.protein.protein.graph Man page
get.sample.overlays Man page
get.sample.variants Man page
getBestVarText Man page
getBestVarText,variantPriorResult-method Man page
getBordColors Man page
getBordColors,variantPriorResult-method Man page
getConvergeMaxIt Man page
getConvergeMaxIt,rwrParams-method Man page
getConvergeThresh Man page
getConvergeThresh,rwrParams-method Man page
getFillColors Man page
getFillColors,variantPriorResult-method Man page
getFilterBestCategory Man page
getFilterBestCategory,priorDbParams-method Man page
getFilterCategory Man page
getFilterCategory,priorDbParams-method Man page
getFilterCollapseCol Man page
getFilterCollapseCol,priorDbParams-method Man page
getFilterIgnoreCol Man page
getFilterIgnoreCol,priorDbParams-method Man page
getFilterLabels Man page
getFilterLabels,priorDbParams-method Man page
getFilterSep Man page
getFilterSep,priorDbParams-method Man page
getFilterValues Man page
getFilterValues,priorDbParams-method Man page
getGraph Man page
getGraph,annotatedIGraph-method Man page
getGraph,variantPriorResult-method Man page
getHitDta Man page
getHitDta,variantPriorResult-method Man page
getHitSummaryID Man page
getHitSummaryID,variantPriorResult-method Man page
getNodeShapes Man page
getNodeShapes,variantPriorResult-method Man page
getNodeStyles Man page
getNodeStyles,variantPriorResult-method Man page
getParameters Man page
getParameters,variantPriorResult-method Man page
getProteinScores Man page
getProteinScores,variantPriorResult-method Man page
getProxDta Man page
getProxDta,variantPriorResult-method Man page
getProxRankCol Man page
getProxRankCol,variantPriorResult-method Man page
getProxSummaryID Man page
getProxSummaryID,variantPriorResult-method Man page
getProxTypeCol Man page
getProxTypeCol,variantPriorResult-method Man page
getRankedQueries Man page
getRankedQueries,variantPriorResult-method Man page
getRestartProb Man page
getRestartProb,rwrParams-method Man page
getSampleName Man page
getSampleName,variantPriorResult-method Man page
getSummarizationLevel Man page
getSummarizationLevel,priorDbParams-method Man page
getVarDta Man page
getVarDta,variantPriorResult-method Man page
getVarSummaryID Man page
getVarSummaryID,variantPriorResult-method Man page
graphDispParams Man page
graphDispParams-class Man page
height Man page
height,graphDispParams-method Man page
height<- Man page
height<-,graphDispParams-method Man page
hitColors Man page
hitColors,graphDispParams-method Man page
hitColors<- Man page
hitColors<-,graphDispParams-method Man page
hitQuery Man page
hitQuery,priorDbParams-method Man page
hitQuery<- Man page
hitQuery<-,priorDbParams-method Man page
idTable Man page
idTable,priorDbParams-method Man page
idTable<- Man page
idTable<-,priorDbParams-method Man page
labelFuncList Man page
labelFuncList,graphDispParams-method Man page
labelFuncList<- Man page
labelFuncList<-,graphDispParams-method Man page
labelSep Man page
labelSep,graphDispParams-method Man page
labelSep<- Man page
labelSep<-,graphDispParams-method Man page
loadGraph Man page
make.target.graph Man page
makeGraphDispParams Man page
makeRwrParams Man page
makeVariantFilter Man page
makeVariantPriorResult Man page
matrixQuery Man page
matrixQuery,priorDbParams-method Man page
matrixQuery<- Man page
matrixQuery<-,priorDbParams-method Man page
maxPlotHits Man page
maxPlotHits,graphDispParams-method Man page
maxPlotHits<- Man page
maxPlotHits<-,graphDispParams-method Man page
maxPlotVars Man page
maxPlotVars,graphDispParams-method Man page
maxPlotVars<- Man page
maxPlotVars<-,graphDispParams-method Man page
nameTextSep Man page
nameTextSep,graphDispParams-method Man page
nameTextSep<- Man page
nameTextSep<-,graphDispParams-method Man page
nodeCombinationFunc Man page
nodeCombinationFunc,graphDispParams-method Man page
nodeCombinationFunc<- Man page
nodeCombinationFunc<-,graphDispParams-method Man page
nodeWeightCol Man page
nodeWeightCol,priorDbParams-method Man page
patVarID Man page
patVarID,priorDbParams-method Man page
patVarID<- Man page
patVarID<-,priorDbParams-method Man page
patientFilterCol Man page
patientFilterCol,priorDbParams-method Man page
patientFilterCol<- Man page
patientFilterCol<-,priorDbParams-method Man page
patientFreqCol Man page
patientFreqCol,priorDbParams-method Man page
patientFreqCol<- Man page
patientFreqCol<-,priorDbParams-method Man page
patientOverlay Man page
patientOverlay,priorDbParams-method Man page
patientOverlay<- Man page
patientOverlay<-,priorDbParams-method Man page
plot Man page
plotFunc Man page
plotFunc,graphDispParams-method Man page
plotFunc<- Man page
plotFunc<-,graphDispParams-method Man page
possibleIdCols Man page
possibleIdCols,priorDbParams-method Man page
possibleIdCols<- Man page
possibleIdCols<-,priorDbParams-method Man page
prior.obj Man page
priorDbParams Man page
priorDbParams-class Man page
process.node.annot Man page
protein.list.to.gene Man page
queryColor Man page
queryColor,graphDispParams-method Man page
queryColor<- Man page
queryColor<-,graphDispParams-method Man page
queryLabel Man page
queryLabel,priorDbParams-method Man page
queryLabel<- Man page
queryLabel<-,priorDbParams-method Man page
queryParams Man page
queryParams,priorDbParams-method Man page
queryParams<- Man page
queryParams<-,priorDbParams-method Man page
random.walk Man page
reconcile.sample.name Man page
reconciledIdCol Man page
reconciledIdCol,priorDbParams-method Man page
reconciledIdCol<- Man page
reconciledIdCol<-,priorDbParams-method Man page
retrieve.param.query Man page
run.prioritization.patient Man page
run.protocol Man page
rwrParams Man page
rwrParams-class Man page
rwrParamsObj Man page
rwrParamsObj,priorDbParams-method Man page
rwrParamsObj<- Man page
rwrParamsObj<-,priorDbParams-method Man page
sampleIdCol Man page
sampleIdCol,priorDbParams-method Man page
sampleIdCol<- Man page
sampleIdCol<-,priorDbParams-method Man page
saveGraph Man page
saveGraph,annotatedIGraph-method Man page
scoreSummaryFunc Man page
scoreSummaryFunc,priorDbParams-method Man page
scoreSummaryFunc<- Man page
scoreSummaryFunc<-,priorDbParams-method Man page
seedLabel Man page
seedLabel,priorDbParams-method Man page
seedLabel<- Man page
seedLabel<-,priorDbParams-method Man page
shapeFunc Man page
shapeFunc,graphDispParams-method Man page
shapeFunc<- Man page
shapeFunc<-,graphDispParams-method Man page
show,annotatedIGraph-method Man page
show,graphDispParams-method Man page
show,priorDbParams-method Man page
show,rwrParams-method Man page
show,variantFilter-method Man page
show,variantPriorResult-method Man page
styleFunc Man page
styleFunc,graphDispParams-method Man page
styleFunc<- Man page
styleFunc<-,graphDispParams-method Man page
summary,variantPriorResult-method Man page
summaryID Man page
summaryID,priorDbParams-method Man page
summaryID<- Man page
summaryID<-,priorDbParams-method Man page
summaryMap Man page
summaryMap,priorDbParams-method Man page
summaryMap<- Man page
summaryMap<-,priorDbParams-method Man page
transformGraph Man page
transformGraph,priorDbParams-method Man page
transformGraph<- Man page
transformGraph<-,priorDbParams-method Man page
variantFilter Man page
variantFilter-class Man page
variantFilterObj Man page
variantFilterObj,priorDbParams-method Man page
variantFilterObj<- Man page
variantFilterObj<-,priorDbParams-method Man page
variantPriorResult Man page
variantPriorResult-class Man page
variantQuery Man page
variantQuery,priorDbParams-method Man page
variantQuery<- Man page
variantQuery<-,priorDbParams-method Man page
variantTypeCol Man page
variantTypeCol,priorDbParams-method Man page
variantTypeCol<- Man page
variantTypeCol<-,priorDbParams-method Man page
verbLevel Man page
verbLevel,priorDbParams-method Man page
verbLevel,rwrParams-method Man page
verbLevel<- Man page
verbLevel<-,priorDbParams-method Man page
width Man page
width,graphDispParams-method Man page
width<- Man page
width<-,graphDispParams-method Man page
dbottomly/HitWalker documentation built on May 15, 2019, 1:22 a.m.

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