rwrParams: Class '"rwrParams"'

In dbottomly/HitWalker: Network-based variant prioriziation using functional assay scores

Description

A class providing control over the parameters of the random walk with restarts (RWR) algorithm

Objects from the Class

Objects can be created by calls of the form makeRwrParams(c.val, threshold, maxit, verbose). Or equivalently through new{"rwrParams", ...}

Slots

c.val:

Object of class "numeric" containing the probability of restart.

threshold:

Object of class "numeric" containing the threshold to judge convergence.

maxit:

Object of class "numeric" containing the maximum number of iterations.

verbose:

Object of class "logical" specifying whether to print additional information

Methods

getConvergeMaxIt

signature(obj = "rwrParams")

getConvergeThresh

signature(obj = "rwrParams")

getRestartProb

signature(obj = "rwrParams")

verbLevel

signature(obj = "rwrParams")

Author(s)

Daniel Bottomly

See Also

priorDbParams, random.walk

Examples

rwr.param <- makeRwrParams(c.val=.3, threshold=1e-10, maxit=100, verbose=TRUE)
show(rwr.param)

dbottomly/HitWalker documentation built on May 15, 2019, 1:22 a.m.