run_prioritization_patient: Run RWR prioritization for a given sample
In dbottomly/HitWalker: Network-based variant prioriziation using functional assay scores

Description Usage Arguments Value Author(s) See Also Examples

A wrapper function that runs the prioritization workflow for a given sample.

1	run.prioritization.patient(db.con, sample.id, graph.obj, param.obj)

`db.con`	An object inheriting from `DBIConnection` to connect to the datasource.
`sample.id`	The sample ID that should be uniquely identifiable even if not an exact match to the datasource.
`graph.obj`	An `annotatedIGraph` object
`param.obj`	A `priorDbParams` object

A variantPriorResultobject containing the results of the prioritization

Daniel Bottomly

annotatedIGraph, priorDbParams, variantPriorResult

if (require(RSQLite) && require(HitWalkerData))
{
  data(params)
  db.con <- dbConnect("SQLite", hitwalker.db.path())
  graph.obj <- loadGraph(graph.file.path(), examp.prior.param)
  test.out <- run.prioritization.patient(db.con=db.con, sample.id="08-00102", graph.obj=graph.obj, param.obj=examp.prior.param)
  head(summary(test.out))
}