Description Usage Arguments Value Author(s) See Also Examples
Provides a simple mechanism to decipher a user-specified sample ID based on the specified columns and table in the priorDbParams
object.
Matching is performed in the sense of grep
so at least a unique substring should be specified in sample.id
.
1 | reconcile.sample.name(sample.id, db.con, param.obj)
|
sample.id |
A |
db.con |
An object that inherits from |
param.obj |
A |
A list containing three elements:
The reconciled sample ID, usually a character string
The unique index of the sample ID, usually an integer
The total number of samples in the datasource
Daniel Bottomly
1 2 3 4 5 6 7 | if(require(RSQLite) && require(HitWalkerData))
{
data(params)
db.con <- dbConnect("SQLite", hitwalker.db.path())
sample.id.list <- reconcile.sample.name("08-00102", db.con, examp.prior.param)
dbDisconnect(db.con)
}
|
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