Man pages for dbottomly/HitWalker
Network-based variant prioriziation using functional assay scores
| add_in_missing_nodes | Fill in missing values in a character vector. |
| annotatedIGraph | Class '"annotatedIGraph"' |
| collapse_nodes_genes | Collapse nodes into a single representative nodes. |
| draw_graph | Low-level wrapper for drawing a graph based on supplied... |
| draw_graph_variantPriorResult | Plot a 'variantPriorResult' object |
| get_hit_prots | Retrieve functional assay hits from datasource |
| get_protein_protein_graph | Retrieve a graph from a datasource. |
| get_sample_overlays | Retrieve sample-specific metadata |
| get_sample_variants | Retrieving and filtering variants |
| graphDispParams | Class '"graphDispParams"' |
| Hitwalker_package | Network-based variant prioriziation using functional assay... |
| loadGraph | Load an annotatedIGraph object |
| make_target_graph | Creating shortest path subgraphs |
| priorDbParams | Class '"priorDbParams"' |
| prior_obj | A sample 'variantPriorResult' object |
| process_node_annot | Apply a function to split annotation |
| protein_list_to_gene | Summarize named character vector based on supplied mappings |
| reconcile_sample_name | Partial name matching in datasource. |
| retrieve_param_query | Send and retrieve the result of an SQL query |
| run_prioritization_patient | Run RWR prioritization for a given sample |
| run_protocol | Prioritizing variants using random walk with restarts |
| rwrParams | Class '"rwrParams"' |
| variantFilter | Class '"variantFilter"' |
| variantPriorResult | Class '"variantPriorResult"' |
