plotEnrichment: plotEnrichment

In ddiez/q3tools: A bunch of shabby tools for the omics data analyst

Description

Plot a heatmap with the significance of terms from enrichment results.

Usage

plotEnrichment(..., cutoff = 0.05, what = "P.Up", ontology = "BP",
  use.name = TRUE, short.names = FALSE, minlength = 40)

Arguments

...	results from enrichment, passed down to getEnrichmentResults()
cutoff	p.value cutoff used to filter results.
what	what to plot: P.Up (default) or P.Down. Passed down to getEnrichmentResults()
ontology	for GO results what ontology to use (default BP).
use.name	logical; whether to return the term's name or the ids. Passed down to getEnrichmentResults()
short.names	whether to use abbreviate() to shorten rownames (handy for long GO descriptions).
minlength	minimum length for abbreviate().

Examples

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ddiez/q3tools documentation built on May 15, 2019, 1:52 a.m.