plotGene: Basic gene ploting function

In ddiez/q3tools: A bunch of shabby tools for the omics data analyst

Description

Plots a gene from a specified assembly using Gviz package. Optionaly plots some data (e.g. read alignments). Enables zooming.

Usage

plotGene(symbol, genome, add.ideogram = FALSE, add.data = NULL,
  from = NULL, to = NULL, biomart = NULL, ylim = NULL, ...)

Arguments

symbol	symbol of the gene to plot. Will be used to search using BiomartGeneRegionTrack.
genome	genome assembly (e.g. mm10 or hg38).
add.ideogram	whether to add an IdeogramTrack (FALSE by default to spead up testing).
add.data	list with data to be added as a DataTrack.
from	start genomic coordinates.
to	end genomic coordinates.
biomart	mart object (optional).
ylim	sets the limits for y-axis (default: NULL).
...	further arguments passed to plotTracks.

Value

nothing but produces a plot as side effect.

Examples

NULL

ddiez/q3tools documentation built on May 15, 2019, 1:52 a.m.