Files in dibbelab/gficf
Gene Frequency - Inverse Cell Frequency
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/cellClassifier.R
R/clustCells.R
R/deGenes.R
R/dimensinalityReduction.R
R/gficf.R
R/pathwayAnalisys.R
R/util.R
R/visualization.R
README.md
img/Cd34_expression.png
img/Cd8a_expression.png
img/tabula_annotated.png
img/tabula_clusters.png
man/classify.cells.Rd
man/clustcells.Rd
man/computePCADim.Rd
man/embedNewCells.Rd
man/ensToSymbol.Rd
man/findClusterMarkers.Rd
man/findVarGenes.Rd
man/gficf.Rd
man/loadGFICF.Rd
man/plotCells.Rd
man/plotGSEA.Rd
man/plotGSVA.Rd
man/plotGeneViolin.Rd
man/plotGenes.Rd
man/plotPathway.Rd
man/runGSEA.Rd
man/runLSA.Rd
man/runPCA.Rd
man/runReduction.Rd
man/saveGFICF.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/ModularityOptimizer.cpp
src/ModularityOptimizer.h
src/RModularityOptimizer.cpp
src/RcppExports.cpp
src/jaccard_coeff.cpp
src/mann_whitney.cpp
src/mann_whitney.h
src/rcpp_mann_whitney.cpp
src/rcpp_parallel_jaccard_coeff.cpp
src/rcpp_parallel_mann_whitney.cpp
tests/testthat.R
