findVarGenes: Find high variable genes following the approach proposed by...

In dibbelab/gficf: Gene Frequency - Inverse Cell Frequency

Find high variable genes following the approach proposed by Chen et al. in BMC Genomics (2016) Code adapted from https://github.com/hillas/scVEGs

Description

Find high variable genes following the approach proposed by Chen et al. in BMC Genomics (2016) Code adapted from https://github.com/hillas/scVEGs

Usage

findVarGenes(data, fitMethod = "locfit", verbose = T)

Arguments

data	list; GFICF object
fitMethod	charachter; Method to use to fit variance and mean expression relationship (loess or locfit).
verbose	boolean; Increase verbosity.

dibbelab/gficf documentation built on Nov. 2, 2022, 2:28 a.m.