plotGeneViolin: Plot the expression of a gene across group of cells.
In dibbelab/gficf: Gene Frequency - Inverse Cell Frequency
View source: R/visualization.R
plotGeneViolin R Documentation
Plot the expression of a gene across group of cells.
Description
Plot the expression of a gene across group of cells with violion plot.
Usage
plotGeneViolin(data, gene, ncol = 3, x = NULL)
Arguments
data
list; GFICF object
gene
characters; Id of genes to plot. It must correspond to the IDs on the rows of raw count matrix.
ncol
numeric; Number of columns of the final plot (defaul is 3).
x
Matrix; Custom normalized raw counts. If present will be used instead of the ones normalized by gficf. Default is NULL.
Value
A list of plots.
dibbelab/gficf documentation built on Nov. 2, 2022, 2:28 a.m.
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View source: R/visualization.R
| plotGeneViolin | R Documentation |
Plot the expression of a gene across group of cells.
Description
Plot the expression of a gene across group of cells with violion plot.
Usage
plotGeneViolin(data, gene, ncol = 3, x = NULL)
Arguments
data |
list; GFICF object |
gene |
characters; Id of genes to plot. It must correspond to the IDs on the rows of raw count matrix. |
ncol |
numeric; Number of columns of the final plot (defaul is 3). |
x |
Matrix; Custom normalized raw counts. If present will be used instead of the ones normalized by gficf. Default is NULL. |
Value
A list of plots.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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