plotGSVA: Plot GSEA results
In dibbelab/gficf: Gene Frequency - Inverse Cell Frequency
View source: R/visualization.R
plotGSVA R Documentation
Plot GSEA results
Description
Circle plot for gene set enrichement analysis results.
Usage
plotGSVA(data, fdr = 0.05, clusterRowCol = T, logFCth = 0)
Arguments
data
list; GFICF object
fdr
number; FDR threshold to select significant pathways to plot.
clusterRowCol
boolean; if TRUE row and col of the plot are clustered.
logFCth
number; LogFC threshold to select pathways to plot.
Value
plot from ggplot2 package.
dibbelab/gficf documentation built on Nov. 2, 2022, 2:28 a.m.
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View source: R/visualization.R
| plotGSVA | R Documentation |
Plot GSEA results
Description
Circle plot for gene set enrichement analysis results.
Usage
plotGSVA(data, fdr = 0.05, clusterRowCol = T, logFCth = 0)
Arguments
data |
list; GFICF object |
fdr |
number; FDR threshold to select significant pathways to plot. |
clusterRowCol |
boolean; if TRUE row and col of the plot are clustered. |
logFCth |
number; LogFC threshold to select pathways to plot. |
Value
plot from ggplot2 package.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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