findClusterMarkers: Find Marker Genes from cell clusters.
In dibbelab/gficf: Gene Frequency - Inverse Cell Frequency
findClusterMarkers R Documentation
Find Marker Genes from cell clusters.
Description
Try to identify marker genes across clusters performing Mann-Whitney U test.
DE genes are identified the expression in each cluster versus the all the other.
Usage
findClusterMarkers(data, nt = 2, hvg = T, verbose = T)
Arguments
data
list; GFICF object
nt
integer; Number of thread to use (default 2).
hvg
boolean; Use only High Variable Genes (default is TRUE).
verbose
boolean; Icrease verbosity.
Value
The updated gficf object.
dibbelab/gficf documentation built on Nov. 2, 2022, 2:28 a.m.
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| findClusterMarkers | R Documentation |
Find Marker Genes from cell clusters.
Description
Try to identify marker genes across clusters performing Mann-Whitney U test. DE genes are identified the expression in each cluster versus the all the other.
Usage
findClusterMarkers(data, nt = 2, hvg = T, verbose = T)
Arguments
data |
list; GFICF object |
nt |
integer; Number of thread to use (default 2). |
hvg |
boolean; Use only High Variable Genes (default is TRUE). |
verbose |
boolean; Icrease verbosity. |
Value
The updated gficf object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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