plotGenes: Plot gene expression across cells

In dibbelab/gficf: Gene Frequency - Inverse Cell Frequency

Plot gene expression across cells

Description

Plot the expression of a group of genes across cells.

Usage

plotGenes(data, genes, log2Expr = T, x = NULL, rescale = F)

Arguments

data	list; GFICF object
genes	characters; Id of genes to plot. It must correspond to the IDs on the rows of raw count matrix.
log2Expr	boolean; Relative expression of a gene is computed on rescaled in log2 expression (default TRUE).
x	Matrix; Custom normalized raw counts. If present will be used instead of the ones normalized by gficf. Default is NULL.
rescale	boolean; Rescale expression between 0 and 1. Default is false.

Value

A list of plots.

dibbelab/gficf documentation built on Nov. 2, 2022, 2:28 a.m.