Man pages for dibbelab/gficf
Gene Frequency - Inverse Cell Frequency
| classify.cells | Classify New Embedded Cells |
| clustcells | PhenoGraph clustering |
| computePCADim | Number of features to use |
| embedNewCells | Embed new cells in an existing space |
| ensToSymbol | Convert Ensamble IDs to Official Gene Symbols |
| findClusterMarkers | Find Marker Genes from cell clusters. |
| findVarGenes | Find high variable genes following the approach proposed by... |
| gficf | Gene Frequency - Inverse Cell Frequency (GF-ICF) |
| loadGFICF | Restore GFICF object. |
| plotCells | Plot cells in the ebedded space |
| plotGenes | Plot gene expression across cells |
| plotGeneViolin | Plot the expression of a gene across group of cells. |
| plotGSEA | Plot GSEA results |
| plotGSVA | Plot GSEA results |
| plotPathway | Plot GSEA results |
| runGSEA | Gene Set Enrichement Analysi on GF-ICF |
| runLSA | Latent Semantic Analysis (LSA) |
| runPCA | Principal Component Analysis (PCA) |
| runReduction | Dimensionality reduction |
| saveGFICF | Save GFICF object. |
