This function compares the taxa registered in a list of
epd.entity.df-class objects and expand their taxonomy (using
filter_taxa) to make them match. When neccesary the
function add empty columns (with
Data frame with the taxonomy from the EPD as from the
numeric Number indicating the value to be used for taxa not previously present in the entities.
epd.entity.df-class objects with taxonomy
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## Not run: epd.connection <- connect_to_epd(host="localhost", database="epd", user="epdr", password="epdrpw") e.list <- listE(epd.connection, country=c("Spain")) e.list <- e.list$e_ spain <- lapply(e.list, get_entity, epd.connection) spain.ut <- unify_taxonomy(spain, get_taxonomy_epd(epd.connection)) colnames(spain[]@commdf@counts) colnames(spain.ut[]@commdf@counts) ## End(Not run)
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