obj_alpha_no_derivs: Objective function which doesn't compute derivatives

Description Usage Arguments

Description

I used this function to compare different optimizers. trust() was as fast as optim, but more reliable. All other methods like simulated annealing were not as reliable.

Usage

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obj_alpha_no_derivs(pars_opt, perturbation_prediction, r_kept, obs_fun,
  p_fun, mypars)

Arguments

perturbation_prediction

Simulated steady state perturbation data

r_kept

elements kept in the minimization (=elements that describe sequestration connections)

obs_fun

Observation function which returns the communicating species

p_fun

Parameter transformation which returns different conditions

mypars

Parameters of the ODE model


dlill/MRAr documentation built on May 16, 2019, 7:24 a.m.