Description Usage Arguments Value
Run a set of different perturbations over varying alphas and a parameter which can be varied
1 2  | run_different_perturbations(dose_pars, pars0, alpha_pars, alphas,
  perturbations, xs, p_log, p_pert, g, cores, alpha_par_settings)
 | 
dose_pars | 
 dosages eg setNames(1:10, "x1")  | 
pars0 | 
 the "default" pars for the model  | 
alpha_pars | 
 The default alpha parameters e.g. c(a_tox_Cxy = log(.Machine$double.eps))  | 
alphas | 
 vector of values for the free pars a to compare r_0 against r_a  | 
perturbations | 
 list of sets of perturbations eg list(c(x1 = log(0.9), y1 = log(0.9)))  | 
xs | 
 xs  | 
p_log | 
 p_log  | 
p_pert | 
 p_pert  | 
g | 
 g  | 
cores | 
 detectFreeCores()  | 
alpha_par_settings | 
 named list. Entries are vectors of the names of aplha_pars you want to use for the algorithm e.g. list(upstream = c("a_tox_Cxy", "a_toy_Cyz"))  | 
a tibble
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