run_different_perturbations: Run a set of different perturbations over varying alphas and...

Description Usage Arguments Value

Description

Run a set of different perturbations over varying alphas and a parameter which can be varied

Usage

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run_different_perturbations(dose_pars, pars0, alpha_pars, alphas,
  perturbations, xs, p_log, p_pert, g, cores, alpha_par_settings)

Arguments

dose_pars

dosages eg setNames(1:10, "x1")

pars0

the "default" pars for the model

alpha_pars

The default alpha parameters e.g. c(a_tox_Cxy = log(.Machine$double.eps))

alphas

vector of values for the free pars a to compare r_0 against r_a

perturbations

list of sets of perturbations eg list(c(x1 = log(0.9), y1 = log(0.9)))

xs

xs

p_log

p_log

p_pert

p_pert

g

g

cores

detectFreeCores()

alpha_par_settings

named list. Entries are vectors of the names of aplha_pars you want to use for the algorithm e.g. list(upstream = c("a_tox_Cxy", "a_toy_Cyz"))

Value

a tibble


dlill/MRAr documentation built on May 16, 2019, 7:24 a.m.