inst/scripts/2.0.0/make-grun-hsc-metadata.R

In drisso/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

write.csv(file="../extdata/2.0.0/metadata-grun-hsc.csv", 
    data.frame(
        Title = "Grun HSC counts",
        Description = "Count matrix for the Grun haematopoietic stem cell single-cell RNA-seq dataset", 
        RDataPath = file.path("scRNAseq", "grun-hsc", "2.0.0", "counts.rds"),
        BiocVersion="3.10",
        Genome="mm10",
        SourceType="TSV",
        SourceUrl="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76983",
        SourceVersion="GSE76983_expdata_BMJhscC.csv.gz",
        Species="Mus musculus",
        TaxonomyId="10090",
        Coordinate_1_based=NA,
        DataProvider="GEO",
        Maintainer="Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
        RDataClass="dgCMatrix",
        DispatchClass="Rds",
        stringsAsFactors = FALSE
    ),
    row.names=FALSE)