Files in drizopoulos/JMbayes2
Extended Joint Models for Longitudinal and Time-to-Event Data

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DESCRIPTION
Development/CI/causal_effects.R Development/CI/causal_effects_fun.R Development/CI/causal_effects_timeRelative.R Development/CI/data_pred.R
Development/CI/model.RData
Development/CI/prepare_data.R Development/CI/run_models.R
Development/DESCRIPTION
Development/Dev_Local_GP/Cpp_funs/Xbetas_calc.R
Development/Dev_Local_GP/Cpp_funs/Xbetas_calc.cpp
Development/Dev_Local_GP/Cpp_funs/arma_logmat.R
Development/Dev_Local_GP/Cpp_funs/arma_logmat.cpp
Development/Dev_Local_GP/Cpp_funs/bench_rnorm.R
Development/Dev_Local_GP/Cpp_funs/bench_rnorm.RData
Development/Dev_Local_GP/Cpp_funs/chol_cube_S.cpp
Development/Dev_Local_GP/Cpp_funs/choleach.cpp
Development/Dev_Local_GP/Cpp_funs/choleeachfor.R
Development/Dev_Local_GP/Cpp_funs/cholfor.cpp
Development/Dev_Local_GP/Cpp_funs/create_fast_ind.cpp
Development/Dev_Local_GP/Cpp_funs/cube_res_meansb.cpp
Development/Dev_Local_GP/Cpp_funs/cubeacces.R
Development/Dev_Local_GP/Cpp_funs/cubeacces.cpp
Development/Dev_Local_GP/Cpp_funs/cubeacces_check.R Development/Dev_Local_GP/Cpp_funs/docall_cbind.R
Development/Dev_Local_GP/Cpp_funs/docall_cbind.cpp
Development/Dev_Local_GP/Cpp_funs/docall_cbindF.cpp
Development/Dev_Local_GP/Cpp_funs/field_void.R
Development/Dev_Local_GP/Cpp_funs/field_void.cpp
Development/Dev_Local_GP/Cpp_funs/idL_lp_fast.R
Development/Dev_Local_GP/Cpp_funs/idL_lp_fast.cpp
Development/Dev_Local_GP/Cpp_funs/insertslices.cpp
Development/Dev_Local_GP/Cpp_funs/insertslices_2.cpp
Development/Dev_Local_GP/Cpp_funs/insertslices_3.cpp
Development/Dev_Local_GP/Cpp_funs/insertslices_bench.R Development/Dev_Local_GP/Cpp_funs/iter_mean/dim_r_example.R
Development/Dev_Local_GP/Cpp_funs/iter_mean/foo_outer.cpp
Development/Dev_Local_GP/Cpp_funs/iter_mean/test.R
Development/Dev_Local_GP/Cpp_funs/iter_mean/test_basic.cpp
Development/Dev_Local_GP/Cpp_funs/iter_mean/test_iter.cpp
Development/Dev_Local_GP/Cpp_funs/jm_fit_manual.R
Development/Dev_Local_GP/Cpp_funs/kronmat.cpp
Development/Dev_Local_GP/Cpp_funs/kronmat2.cpp
Development/Dev_Local_GP/Cpp_funs/linpred_loglong_convNA.cpp
Development/Dev_Local_GP/Cpp_funs/linpred_loglong_convNA_eta.cpp
Development/Dev_Local_GP/Cpp_funs/linpredmixed.R
Development/Dev_Local_GP/Cpp_funs/linpredmixed.cpp
Development/Dev_Local_GP/Cpp_funs/log_b_test.cpp
Development/Dev_Local_GP/Cpp_funs/log_b_test_2.R
Development/Dev_Local_GP/Cpp_funs/log_b_test_2.cpp
Development/Dev_Local_GP/Cpp_funs/log_long.cpp
Development/Dev_Local_GP/Cpp_funs/log_u.R
Development/Dev_Local_GP/Cpp_funs/log_u.cpp
Development/Dev_Local_GP/Cpp_funs/mat_division.R
Development/Dev_Local_GP/Cpp_funs/mat_division.cpp
Development/Dev_Local_GP/Cpp_funs/mat_to_field.cpp
Development/Dev_Local_GP/Cpp_funs/mattofield.R Development/Dev_Local_GP/Cpp_funs/propose_rnorm.R
Development/Dev_Local_GP/Cpp_funs/propose_rnorm.RData
Development/Dev_Local_GP/Cpp_funs/propose_rnorm.cpp
Development/Dev_Local_GP/Cpp_funs/propose_rnorm_2.cpp
Development/Dev_Local_GP/Cpp_funs/propose_rnorm_3.cpp
Development/Dev_Local_GP/Cpp_funs/rnorm2_R.cpp
Development/Dev_Local_GP/Cpp_funs/rnorm3_R.cpp
Development/Dev_Local_GP/Cpp_funs/rnorm_R.cpp
Development/Dev_Local_GP/Cpp_funs/source_funs.cpp
Development/Dev_Local_GP/Cpp_funs/test_if_for_scope.R
Development/Dev_Local_GP/Cpp_funs/test_if_for_scope.cpp
Development/Dev_Local_GP/Cpp_funs/test_voidinvoid.R
Development/Dev_Local_GP/Cpp_funs/update_b_draft.cpp
Development/Dev_Local_GP/Cpp_funs/voidinvoid.cpp
Development/Dev_Local_GP/Eta_with_NAs/create_eta.cpp
Development/Dev_Local_GP/Eta_with_NAs/eta_check.cpp
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Development/MCMC/D/D_examples.R
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Development/MCMC/MCMCplan
Development/MCMC/Surv_Model/C++/List_of_Lists.cpp
Development/MCMC/Surv_Model/C++/Wlong.R
Development/MCMC/Surv_Model/C++/Wlong.cpp
Development/MCMC/Surv_Model/C++/censored_normal.cpp
Development/MCMC/Surv_Model/C++/char.cpp
Development/MCMC/Surv_Model/C++/create_Wlong.cpp
Development/MCMC/Surv_Model/C++/group_sum2.cpp
Development/MCMC/Surv_Model/C++/log_long.cpp
Development/MCMC/Surv_Model/C++/mcmc.cpp
Development/MCMC/Surv_Model/C++/mcmc_block.cpp
Development/MCMC/Surv_Model/C++/mcmc_fit_surv.R Development/MCMC/Surv_Model/C++/mcmc_prep.R Development/MCMC/Surv_Model/C++/ss_sigmas.R
Development/MCMC/Surv_Model/C++/ss_sigmas.cpp
Development/MCMC/Surv_Model/C++/test_Wlong.R Development/MCMC/Surv_Model/C++/test_logLong.R Development/MCMC/Surv_Model/examples.R Development/MCMC/Surv_Model/fast_log_Surv.R
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Development/MCMC/betas/D_inv_test.cpp
Development/MCMC/betas/R and C functions/add_zero_colrows.cpp
Development/MCMC/betas/R and C functions/create_HC_X3.R Development/MCMC/betas/R and C functions/create_X_dot.Rmd Development/MCMC/betas/R and C functions/create_X_dot3.R
Development/MCMC/betas/R and C functions/docall_rbindF.cpp
Development/MCMC/betas/R and C functions/inv_cholupdate.cpp
Development/MCMC/betas/R and C functions/propose_mvnorm_vec.cpp
Development/MCMC/betas/jm_int.R Development/MCMC/betas/test_Gibbs.R Development/MCMC/betas/test_MH.R Development/MCMC/betas/test_both.R
Development/MCMC/betas/update_FE_Gibbs.cpp
Development/MCMC/betas/update_FE_MH.cpp
Development/MCMC/betas/update_FE_both.cpp
Development/MCMC/betas/update_betasC.cpp
Development/MCMC/betas/update_betasR.R Development/MCMC/betas/update_betas_C_vs_R.R Development/MCMC/sampling_betas.R Development/MCMC/simulate_test.R Development/jm/PBC_data.R Development/jm/R_to_Cpp.R Development/jm/extract_frames/extractFrames_new.R Development/jm/extract_frames/most possible models.R Development/jm/help_functions.R
Development/jm/mean_u.cpp
Development/jm/sample_case.R Development/jm/sample_case_same_as_test_jm.R Development/jm/test_jm.R Development/package_native_routine_registration_skeleton.R
Development/predict/JMbayes2_Funs.h
Development/predict/JMbayes2_LogDens.h
Development/predict/predict.R Development/predict/predict_Funs.R
Development/predict/simulate_REs.cpp
Development/sample_b.R
NAMESPACE
NEWS.md R/RcppExports.R R/accuracy_measures.R R/basic_methods.R R/create_Wlong_mats.R R/help_functions.R R/jm.R R/jm_fit.R R/predict_funs.R README.Rmd README.md
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data/aids.rda
data/pbc2.id.rda
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data/prothro.rda
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man/JMbayes2.Rd man/accuracy.Rd man/aids.Rd man/coda_methods.Rd man/cr_setup.Rd
man/figures/logo.png
man/figures/logo_1.png
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man/jm.Rd man/methods.Rd man/pbc.Rd man/predict.Rd man/prothro.Rd man/rc_setup.Rd
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src/JMbayes2_D.h
src/JMbayes2_FE.h
src/JMbayes2_Funs.h
src/JMbayes2_LogDens.h
src/JMbayes2_RE.h
src/JMbayes2_Surv.h
src/JMbayes2_penalties.h
src/JMbayes2_sigmas.h
src/JMbayes2_tau.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/init.c
src/mcmc_fit.cpp
vignettes/Competing_Risks.Rmd vignettes/Dynamic_Predictions.Rmd vignettes/JMbayes2.Rmd vignettes/Multi_State_Processes.Rmd vignettes/Non_Gaussian_Mixed_Models.Rmd vignettes/Recurring_Events.Rmd vignettes/Transformation_Functions.Rmd
drizopoulos/JMbayes2 documentation built on Aug. 6, 2022, 2:30 a.m.