Man pages for dth2/EpiModelHIV_SHAMP
Epidemic Modeling of HIV Transmission among MSM, MSMF and Heterosexual Populations
| acts_shamp | Sexual Acts Module for up to 5 race groups and 2 sexes. |
| aging | Aging Module |
| aging_het | Aging Module |
| aging_msm | Aging Module |
| apportion_lr | Apportion Least-Remainder Method |
| assign_degree | Assign Degree Vertex Attribute on Network Objects |
| base_nw_msm | Construct Base Network for Model Estimation and Simulation |
| births_shamp2 | Births Module for up to 5 race groups heterosexuals and MSM... |
| calc_nwstats_msm | Calculate Target Statistics for Network Model Estimation |
| cd4_het | CD4 Progression Module |
| condoms_shamp | Condom Use Module for 5 race groups and het/msm. |
| control_shamp | Epidemic Model Control Settings |
| deaths_shamp | Death Module for up to 5 race groups heterosexuals and MSM. |
| demogupdate_shamp | Demography Check Module |
| disclose_shamp | Disclosure Module for up to 5 race groups and heterosexuals... |
| edges_correct_msm | Adjustment for the Edges Coefficient with Changing Network... |
| EpiModelHIV-package | HIV Transmission Dynamics among MSM and Heterosexuals |
| est | Fitted Network Models for 10000 Person Network |
| get_args | Get Arguments from EpiModel Parameterization Functions |
| heatbath_msmf_shamp | Transmission Module for Heat Bath Exposure of MSMF to an MSM... |
| immigration_shamp | Transmission Module for those immigrating out of the country... |
| init_ccr5_msm | Sets the CCR5 genetic status of persons |
| init_ccr5_shamp | Sets the CCR5 genetic status of persons |
| InitErgmTerm.absdiffby | Definition for absdiffby ERGM Term |
| InitErgmTerm.absdiffnodemix | Definition for absdiffnodemix ERGM Term |
| initialize_het | Initialization Module |
| initialize_msm | Initialization Module |
| initialize_shamp | Initialization Module for up to 5 race groups heterosexuals... |
| init_shamp | Epidemic Model Initial Conditions for SHAMP |
| init_status_msm | Initialize the HIV status of persons in the network |
| init_status_shamp | Initialize the HIV status of persons in the network |
| input_shamp | Import and Check Data |
| ltGhana | Life Table for Ghana |
| make_nw_het | Calculate Network Statistics |
| param_shamp | Epidemic Model Parameters for SHAMP |
| position_shamp | Position Module for msm and heterosexual contacts. |
| prep_shamp | PrEP Module for up to 5 race groups heterosexuals and MSM. |
| prevalence_shamp | Prevalence Calculations within Time Steps for up to 5 race... |
| progress_msm | Disease Progression Module |
| reallocate_pcp | Proportionally Reallocate PrEP Adherence Class Probability |
| reinit_het | Reinitialization Module |
| reinit_msm | Re-Initialization Module |
| reinit_shamp | Re-Initialization Module |
| remove_bad_roles_msm | Removes any sexual partnerships prohibited by sexual role... |
| riskhist_shamp | Risk History Module |
| simnet_shamp | Network Resimulation Module |
| size.test | Size test for memory allocation. |
| sourceDir | Source All Files in a Directory |
| st | Network Statistics Network Models for 10000 Person Network |
| test_shamp | HIV Testing Module for up to 5 race groups heterosexuals and... |
| trans_shamp | Transmission Module for AI and VI |
| truncate_sim | Truncate Simulation Time Series |
| tx_shamp | Treatment Module for up to 5 race groups heterosexuals and... |
| update_aiclass_msm | Update Role Class in One-Off Partnerships |
| update_roleclass_msm | Update Role Class in Main and Casual Partnerships |
| verbose_het | Verbose Module |
| verbose_msm | Verbose Module |
| vl_shamp | Viral Load Module |
