Files in dth2/EpiModelHIV_SHAMP
Epidemic Modeling of HIV Transmission among MSM, MSMF and Heterosexual Populations
.Rbuildignore
.gitignore
.travis.yml
01.setup_ego.R
01.setup_ego_JKB.R
DESCRIPTION
Model fit testing.R
NAMESPACE
R/EpiModelHIV-package.R
R/ErgmTerms.R
R/RcppExports.R
R/data.R
R/estimation.R
R/input.data.shamp.R
R/mod.acts.shamp.R
R/mod.aging.R
R/mod.births.shamp2.R
R/mod.cd4.R
R/mod.condoms.shamp.R
R/mod.death.shamp.R
R/mod.demog.shamp.R
R/mod.disclose.shamp.R
R/mod.immigration.R
R/mod.initialize.R
R/mod.initialize.shamp2.R
R/mod.msmf.heatbath.R
R/mod.position.shamp.R
R/mod.prep.shamp.R
R/mod.prevalence.shamp.R
R/mod.progress.R
R/mod.riskhist.shamp.R
R/mod.simnet.shamp.R
R/mod.test.shamp.R
R/mod.trans_shamp.R
R/mod.tx.shamp.R
R/mod.update.aiclass.R
R/mod.update.roleclass.R
R/mod.verbose.R
R/mod.vl.shamp.R
R/params.shamp.R
R/print.R
R/size.test.R
R/utilities.R
README.md
data/ego.obj_c.rda
data/ego.obj_i.rda
data/ego.obj_p.rda
ego/setup.R
inst/het-test-script.R
inst/netsim.mods.R
man/EpiModelHIV-package.Rd
man/InitErgmTerm.absdiffby.Rd
man/InitErgmTerm.absdiffnodemix.Rd
man/acts_shamp.Rd
man/aging.Rd
man/aging_het.Rd
man/aging_msm.Rd
man/apportion_lr.Rd
man/assign_degree.Rd
man/base_nw_msm.Rd
man/births_shamp2.Rd
man/calc_nwstats_msm.Rd
man/cd4_het.Rd
man/condoms_shamp.Rd
man/control_shamp.Rd
man/deaths_shamp.Rd
man/demogupdate_shamp.Rd
man/disclose_shamp.Rd
man/edges_correct_msm.Rd
man/est.Rd
man/get_args.Rd
man/heatbath_msmf_shamp.Rd
man/immigration_shamp.Rd
man/init_ccr5_msm.Rd
man/init_ccr5_shamp.Rd
man/init_shamp.Rd
man/init_status_msm.Rd
man/init_status_shamp.Rd
man/initialize_het.Rd
man/initialize_msm.Rd
man/initialize_shamp.Rd
man/input_shamp.Rd
man/ltGhana.Rd
man/make_nw_het.Rd
man/param_shamp.Rd
man/position_shamp.Rd
man/prep_shamp.Rd
man/prevalence_shamp.Rd
man/progress_msm.Rd
man/reallocate_pcp.Rd
man/reinit_het.Rd
man/reinit_msm.Rd
man/reinit_shamp.Rd
man/remove_bad_roles_msm.Rd
man/riskhist_shamp.Rd
man/simnet_shamp.Rd
man/size.test.Rd
man/sourceDir.Rd
man/st.Rd
man/test_shamp.Rd
man/trans_shamp.Rd
man/truncate_sim.Rd
man/tx_shamp.Rd
man/update_aiclass_msm.Rd
man/update_roleclass_msm.Rd
man/verbose_het.Rd
man/verbose_msm.Rd
man/vl_shamp.Rd
model_tests.R
src/RcppExports.cpp
src/changestats.users.c
src/changestats.users.h
src/include_stubs.c
src/mod.aging.cpp
tempR/EpiModelHIV-package.R
tempR/ErgmTerms.R
tempR/RcppExports.R
tempR/data.R
tempR/estimation.R
tempR/mod.acts.R
tempR/mod.acts.shamp.R
tempR/mod.births.R
tempR/mod.births.shamp.R
tempR/mod.cd4.R
tempR/mod.condoms.R
tempR/mod.condoms.shamp2.R
tempR/mod.death.R
tempR/mod.death.shamp.R
tempR/mod.disclose.R
tempR/mod.disclose.shamp.R
tempR/mod.initialize.R
tempR/mod.initialize.shamp2.R
tempR/mod.msmf.heatbath.R
tempR/mod.position.R
tempR/mod.position.shamp.R
tempR/mod.prep.R
tempR/mod.prep.shamp.R
tempR/mod.prevalence.R
tempR/mod.prevalence.shamp.R
tempR/mod.progress.R
tempR/mod.riskhist.R
tempR/mod.riskhist.shamp.R
tempR/mod.simnet.R
tempR/mod.simnet.shamp.R
tempR/mod.test.R
tempR/mod.test.shamp.R
tempR/mod.trans.R
tempR/mod.tx.R
tempR/mod.tx.shamp.R
tempR/mod.update.aiclass.R
tempR/mod.update.roleclass.R
tempR/mod.verbose.R
tempR/mod.vl.R
tempR/mod.vl.shamp.R
tempR/params.R
tempR/params.shamp.R
tempR/print.R
tempR/utilities.R
test
tests/Test_acts_max_acts.R
tests/Test_acts_min_W_acts.R
tests/Test_baseline.R
tests/Test_baseline.Rmd
tests/Test_baseline.html
tests/Test_births.R
tests/Test_death.R
tests/Test_demog.R
tests/Test_immig_max_infections.R
tests/Test_immig_max_infections_stayaway.R
tests/Test_immig_notrans_infections_stayaway.R
tests/Test_msmheatbath_max_infection_nomsmf.R
tests/Test_msmheatbath_max_infections.R
tests/Test_template.R
tests/Test_testing.R
tests/Test_testing_alwaystest.R
tests/Test_testing_nevertest.R
tests/Test_testing_test_daily_alltest.R
tests/Test_testing_test_frequently_alltest_immig_out.R
tests/Test_treatment_all_FS.R
tests/Test_treatment_noinitprob_all_FS.R
tests/age_mort.R
tests/testthat.R
tests/testthat/test-estimation.R
tests/testthat/test-netsim.R
tests/testthat/test-params.R
