##Running network simulations with EPIModelHIV and ergm.ego.
#Load required packages.
library(EpiModelHIV)
library(EpiModelHPC)
#devtools::install_github("statnet/ergm.ego-private",ref="3.7-compat", auth_token ="")
#devtools::install_github("statnet/tergmLite")
#devtools::install_github("statnet/ergm.ego")
library(ergm.ego)
library(tergmLite)
##Load data
load(file = "~/EpiModelHIV_shamp_modeling/scenarios/est/fitsmall.rda")
load(file = "~/EpiModelHIV_shamp_modeling/scenarios/est/data.params.rda")
source(file= "~/EpiModelHIV_SHAMP2/tests/age_mort.R")
############################################################################
##No infection
param <- param_shamp(data.params,
immig.depart.BI.f=1,
immig.depart.HI.f=1,
immig.depart.BI.m=1,
immig.depart.HI.m=1,
immig.return.BI.f=0,
immig.return.HI.f=0,
immig.return.BI.m=0,
immig.return.HI.m=0,
immig.aq.prob.BI.f=0,
immig.aq.prob.HI.f=0,
immig.aq.prob.BI.m=0,
immig.aq.prob.HI.m=0,
msm.aq.prob.B=0,
msm.aq.prob.BI=0,
msm.aq.prob.H=0,
msm.aq.prob.HI=0,
msm.aq.prob.W=0,
URVI.prob = .02,
UIVI.prob = .02)
init <- init_shamp()
control <- control_shamp(nsteps = 1560)
test_immig_notrans_infections_stayaway<-netsim(est, param, init, control)
##Outside of package
save(test_immig_notrans_infections_stayaway, file = "~/EpiModelHIV_shamp_modeling/scenarios/test_immig_notrans_infections_stayaway.rda")
##Run the Check
sum(test_immig_notrans_infections_stayaway$epi$incid.L,na.rm = TRUE)
sum(test_immig_notrans_infections_stayaway$epi$incid.H,na.rm = TRUE)
sum(test_immig_notrans_infections_stayaway$epi$incid.FA,na.rm = TRUE)
table(test_immig_notrans_infections_stayaway$attr[[1]]$inf.class)
test_immig_notrans_infections_stayaway$epi$i.prev.W[,1][1040]
test_immig_notrans_infections_stayaway$epi$i.prev.B[,1][1040]
test_immig_notrans_infections_stayaway$epi$i.prev.BI[,1][1040]
test_immig_notrans_infections_stayaway$epi$i.prev.H[,1][1040]
test_immig_notrans_infections_stayaway$epi$i.prev.HI[,1][1040]
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