Files in duohongrui/simutils

Common functions used in data simulation and evaluation

LICENSE.md R/DEGs_manipulation.R R/add_class.R R/calculate_batch_properties.R R/calculate_cluster_properties.R R/calculate_data_properties.R R/calculate_trajectory_properties.R R/change_parameters.R R/check_prior_info.R R/check_python_installation.R R/classification_model.R R/data.R R/data_conversion.R R/data_preparation.R R/default_parameters.R R/fix.path.R R/get_S4_values.R R/globals.R R/list_docker_container.R R/make_trees.R R/match_cells.R R/method_definition.R R/normalization.R R/parameter_manipulation.R R/parameters.R R/pipe_symbol.R R/proportionate.R R/random_seed.R R/random_string.R R/read_h5file_in_R.R R/synthesize_cells.R R/traj_utils.R R/tree_similarity.R R/write_h5files.R R/zzz.R README.Rmd README.md data-raw/gene_length.R man/add_class.Rd man/add_data_to_model.Rd man/authors_definition.Rd man/cal_cor_dist.Rd man/calculate_CDI.Rd man/calculate_CH_index.Rd man/calculate_DB_index.Rd man/calculate_DEGs_properties.Rd man/calculate_ROGUE.Rd man/calculate_batch_properties.Rd man/calculate_cluster_properties.Rd man/calculate_connectivity.Rd man/calculate_dunn.Rd man/calculate_silhouette.Rd man/calculate_traj_metrics.Rd man/calculate_trajectory_properties.Rd man/cell_properties.Rd man/change_parameters.Rd man/change_scGAN_parameters.Rd man/change_values_in_list.Rd man/check_prior_info.Rd man/check_python_installation.Rd man/data_conversion.Rd man/default_parameters.Rd man/fix_path.Rd man/gene_properties.Rd man/get_S4_values.Rd man/get_default_value.Rd man/h5_to_r.Rd man/hs_gene_length.Rd man/is_define_parameters.Rd man/leaf_node_depth.Rd man/list_docker_container.Rd man/make_trees.Rd man/manuscript_definition.Rd man/match_cells.Rd man/meta_info.Rd man/method_definition.Rd man/mm_gene_length.Rd man/model_predict.Rd man/node_height_dis.Rd man/normalization_simutils.Rd man/param_Boolean.Rd man/param_character.Rd man/param_dataframe.Rd man/param_integer.Rd man/param_numeric.Rd man/param_others.Rd man/param_reference.Rd man/param_vector.Rd man/parameter_sets.Rd man/perform_DEA.Rd man/proportionate.Rd man/random_seed.Rd man/scgan_data_conversion.Rd man/set_parameters.Rd man/start_cell.Rd man/synthesize_cells.Rd man/test_uni_distribution.Rd man/time_string.Rd man/true_DEGs_proportion.Rd man/write_h5files.Rd tests/testthat.R tests/testthat/test-calculate_data_properties.R tests/testthat/test-data_conversion.R tests/testthat/test-proportionate.R