toCellDataSet: Convert an 'SCESet' to a 'CellDataSet'
In dynverse/scaterlegacy: Single-cell analysis toolkit for gene expression data in R
Description
Usage
Arguments
Value
Examples
View source: R/SCESet-methods.R
Description
Convert an SCESet to a CellDataSet
Usage
1
toCellDataSet(sce, exprs_values = "exprs")
Arguments
sce
An SCESet object
exprs_values
What should exprs(cds) be mapped from in the SCESet? Should be
one of "exprs", "tpm", "fpkm", "counts"
Value
An object of class SCESet
Examples
1
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data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
if ( requireNamespace("monocle") ) {
toCellDataSet(example_sceset)
}
dynverse/scaterlegacy documentation built on Feb. 17, 2020, 5:07 a.m.
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Description Usage Arguments Value Examples
View source: R/SCESet-methods.R
Description
Convert an SCESet to a CellDataSet
Usage
1 | toCellDataSet(sce, exprs_values = "exprs")
|
Arguments
sce |
An |
exprs_values |
What should |
Value
An object of class SCESet
Examples
1 2 3 4 5 6 7 | data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
if ( requireNamespace("monocle") ) {
toCellDataSet(example_sceset)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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