HRM panel creation

Description Usage Arguments Details Value Note References Examples

Create Spectral Library

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createSpectralLibrary(tb, minFragNb = 3, minNbTransitions = 5,
  maxNbTransitions = 5, minBasePeakFraction = 0, ionTypeFilter = c("a",
  "b", "x", "y"), includeNL = T, rankingMetric = "adjustedIntensitySum")

`tb`	tibble maxQuant spectrum level search results
`minFragNb`	min frag number default 3 (i.e. b3 and y3 will be kept)
`minNbTransitions`	minimum number of fragments
`minBasePeakFraction`	minimum intnsity fraction of base peak (most intense kept fragment)
`ionTypeFilter`	selected ion type default a,b,x,y
`includeNL`	include neutral loss peaks defualt TRUE
`rankingMetric`	character. column name, used for ranking peptide, default "adjustedIntensitySum", c("adjustedIntensitySum","psmScore","precApexIntensity")