Description Usage Arguments Details Value Note References Examples
Create Spectral Library
1 2 3 | createSpectralLibrary(tb, minFragNb = 3, minNbTransitions = 5,
maxNbTransitions = 5, minBasePeakFraction = 0, ionTypeFilter = c("a",
"b", "x", "y"), includeNL = T, rankingMetric = "adjustedIntensitySum")
|
tb |
tibble maxQuant spectrum level search results |
minFragNb |
min frag number default 3 (i.e. b3 and y3 will be kept) |
minNbTransitions |
minimum number of fragments |
minBasePeakFraction |
minimum intnsity fraction of base peak (most intense kept fragment) |
ionTypeFilter |
selected ion type default a,b,x,y |
includeNL |
include neutral loss peaks defualt TRUE |
rankingMetric |
character. column name, used for ranking peptide, default "adjustedIntensitySum", c("adjustedIntensitySum","psmScore","precApexIntensity") |
No details
data.frame
No note
NA
1 | print("No examples")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.