proteotypicPeptideExport: # Export top X peptide per protein (ordered by...

In eahrne/SpectroX: Proteotypic peptide selection and SRM/PRM/HRM panel creation

Description

# Export top X peptide per protein (ordered by 'adjustedIntensitySum') and add theoretical peptides ranked by length if fewer than X peptides were identified by MaxQuant

Usage

proteotypicPeptideExport(spectralLibrary, theoPeptides = NA,
  targetProteins = unique(spectralLibrary$protein),
  nbPeptidesPerProtein = 5, outFile = paste0(tempdir(), "/tmp.xls"))

Arguments

spectralLibrary	tibble
theoPeptides	data.frame 'peptide' 'protein' 'length'
targetProteins	list of protein accesion numbers e.g. P62258. default all proteins in spectralLibrary
nbPeptidesPerProtein	number of peptides per protein to be exported
outFile	path to output file defult tmp.xls in tmp dir

Note

No note

References

NA

Examples

print("No examples")

eahrne/SpectroX documentation built on May 21, 2019, 3:09 a.m.