Description Usage Arguments Note References Examples
# Export top X peptide per protein (ordered by 'adjustedIntensitySum') and add theoretical peptides ranked by length if fewer than X peptides were identified by MaxQuant
1 2 3 | proteotypicPeptideExport(spectralLibrary, theoPeptides = NA,
targetProteins = unique(spectralLibrary$protein),
nbPeptidesPerProtein = 5, outFile = paste0(tempdir(), "/tmp.xls"))
|
spectralLibrary |
tibble |
theoPeptides |
data.frame 'peptide' 'protein' 'length' |
targetProteins |
list of protein accesion numbers e.g. P62258. default all proteins in spectralLibrary |
nbPeptidesPerProtein |
number of peptides per protein to be exported |
outFile |
path to output file defult tmp.xls in tmp dir |
No note
NA
1 | print("No examples")
|
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