digestProteome: Get peptide candidates per protein

In eahrne/SpectroX: Proteotypic peptide selection and SRM/PRM/HRM panel creation

Description

Get peptide candidates per protein

Usage

digestProteome(proteins, proteaseRegExp = "[KR](?!P)", dispProgressBar = T,
  peptideLengthRange = c(6, 21), nbMiscleavages = 0,
  exclusivePeptides = T, trimAC = T)

Arguments

proteins	list
proteaseRegExp	character '[KR](?!P)' - trypsin
dispProgressBar	T/F
peptideLengthRange	integer vector default c(6,21)
nbMiscleavages	0
exclusivePeptides	TRUE/FALSE get exclusive peptides only i.e. peptides mapping to a single protein. default T
trimAC	TRUE/FALSE default TRUE sp|P62258|1433E_HUMAN -> P62258

Value

data.frame peptide,protein

Note

No note

References

NA

Examples

print("No examples")

eahrne/SpectroX documentation built on May 21, 2019, 3:09 a.m.