Description Usage Arguments Value Note References Examples
Get peptide candidates per protein
1 2 3 | digestProteome(proteins, proteaseRegExp = "[KR](?!P)", dispProgressBar = T,
peptideLengthRange = c(6, 21), nbMiscleavages = 0,
exclusivePeptides = T, trimAC = T)
|
proteins |
list |
proteaseRegExp |
character '[KR](?!P)' - trypsin |
dispProgressBar |
T/F |
peptideLengthRange |
integer vector default c(6,21) |
nbMiscleavages |
0 |
exclusivePeptides |
TRUE/FALSE get exclusive peptides only i.e. peptides mapping to a single protein. default T |
trimAC |
TRUE/FALSE default TRUE sp|P62258|1433E_HUMAN -> P62258 |
data.frame peptide,protein
No note
NA
1 | print("No examples")
|
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