fpbase_data: fluorescent protein properties from fpbase
In ec363/fpcountr: Fluorescent Protein Calibration For Plate Readers
fpbase_data R Documentation
fluorescent protein properties from fpbase
Description
A dataset containing some of the properties of all the 'basic' (single
fluorescent state) fluorescent proteins in the fpbase database (downloaded
2022.10.04).
Usage
fpbase_data
Format
A data frame with 593 rows and 16 variables:
- url
FPbase url
- name
name
- stokes
Stokes shift (nm)
- slug
slug - lower case name used in url
- ipg_id
Identical
Protein Group ID at Pubmed
- agg
oligomerisation state
- ex_max
wavelength of excitation peak (nm)
- em_max
wavelength
of emission peak (nm)
- ext_coeff
excitation coefficient (EC,
M-1cm-1)
- qy
quantum yield
- pka
pKa
- brightness
brightness
- bleach
rate of
photobleaching/photostability (s)
- maturation
maturation half time
(min)
- lifetime
fluorescence lifetime (ns)
- cofactor
cofactor
required for fluorescence (if any)
Source
ec363/fpcountr documentation built on Nov. 29, 2024, 12:03 p.m.
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| fpbase_data | R Documentation |
fluorescent protein properties from fpbase
Description
A dataset containing some of the properties of all the 'basic' (single fluorescent state) fluorescent proteins in the fpbase database (downloaded 2022.10.04).
Usage
fpbase_data
Format
A data frame with 593 rows and 16 variables:
- url
FPbase url
- name
name
- stokes
Stokes shift (nm)
- slug
slug - lower case name used in url
- ipg_id
Identical Protein Group ID at Pubmed
- agg
oligomerisation state
- ex_max
wavelength of excitation peak (nm)
- em_max
wavelength of emission peak (nm)
- ext_coeff
excitation coefficient (EC, M-1cm-1)
- qy
quantum yield
- pka
pKa
- brightness
brightness
- bleach
rate of photobleaching/photostability (s)
- maturation
maturation half time (min)
- lifetime
fluorescence lifetime (ns)
- cofactor
cofactor required for fluorescence (if any)
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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