parse_magellan_spectrum: Parse Tecan Spark/Magellan data from absorbance spectrum data

In ec363/fpcountr: Fluorescent Protein Calibration For Plate Readers

Parse Tecan Spark/Magellan data from absorbance spectrum data

Description

Parses absorbance spectrum data exported from a Tecan Spark plate reader using Magellan software. Parsing consists of data extraction, data tidying, and data joining to relevant metadata.

Usage

parse_magellan_spectrum(
  data_csv,
  metadata_csv,
  wellstart = "A1",
  wellend = "H12"
)

Arguments

data_csv	path to CSV file from Tecan Spark plate reader
metadata_csv	path to CSV file containing metadata
wellstart	character string representing first well recorded in data file. Defaults to "A1".
wellend	character string representing last well recorded in data file. Defaults to "H12".

Value

a data.frame containing the parsed plate reader data

Examples

## Not run: 
  parsed_data <- parse_magellan_spectrum(
    data_csv = "data/20210104_data.csv",
    metadata_csv = "data/20210104_metadata.csv",
    wellstart = "A1", wellend = "H12"
  )

## End(Not run)

ec363/fpcountr documentation built on Nov. 29, 2024, 12:03 p.m.