CellScore_FeaturePlot: Cell Score Feature Plot

In eisascience/scCustFx: single-cell custom fxs Package

Cell Score Feature Plot

Description

Plots a feature plot of cell scores from a specific reduction

Usage

CellScore_FeaturePlot(
  SerObj,
  reduction = "inmf",
  compN = 1,
  plot = T,
  plotting_reduction = "umap",
  raster = F,
  raster.dpi = c(2000, 2000),
  pt.size = 0.1,
  order = T
)

Arguments

SerObj	A Seurat SerObj.
reduction	which reduction to use to get cell scores
plot	if true returns plot else returns SerObj with CellScore
plotting_reduction	a reduction for plotting.
raster	raster or not
raster.dpi	default c(2000, 2000)
pt.size	point size passed to featureplot
order	default T passed to featureplot

Details

General principles behind it:

Value

plot or SerObj

Examples

CellScore_FeaturePlot(SerObj = SerObj, compN = 3, reduction = "inmf",
plotting_reduction = "liger_r1_umap", plot = T,
pt.size = .5)

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.