CellScore_VlnPlot: Cell Score Violin Plot

In eisascience/scCustFx: single-cell custom fxs Package

Cell Score Violin Plot

Description

Plots a violin plot of cell scores from a specific reduction

Usage

CellScore_VlnPlot(
  SerObj,
  reduction = "inmf",
  group.by = "orig.ident",
  compN = 1,
  plot = T,
  raster = F,
  pt.size = 0.1,
  cols = NULL
)

Arguments

SerObj	A Seurat SerObj.
reduction	which reduction to use to get cell scores
plot	if true returns plot else returns SerObj with CellScore
raster	raster or not
pt.size	point size passed to featureplot
cols	color vector passed to VlnPlot

Details

General principles behind it:

Value

plot or SerObj

Examples

CellScore_VlnPlot(SerObj = ComboSerObj_Ser, compN = 2, reduction = "inmf",
plot = T, pt.size = .5,  group.by = "Species", cols = col_vector)

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.