API for emvolz-phylodynamics/variantAnalysis
sarscov2 variant analysis
| Global functions | |
|---|---|
| .read.beast | Man page Source code |
| clock_outlier_plot | Source code |
| cluster_muts | Man page Source code |
| cluster_muts_new | Man page Source code |
| cluster_origin_comparison | Man page Source code |
| cluster_origin_comparison2 | Man page Source code |
| cluster_sizes | Man page Source code |
| clusterwise_logistic | Man page Source code |
| compute_genotypes | Man page Source code |
| condense_clusters | Source code |
| dedup_data | Man page Source code |
| freq_plots | Source code |
| gam_plots | Source code |
| get_clusternode_gam | Source code |
| get_clusternode_gam_maps | Source code |
| get_clusternode_mlesky | Source code |
| hier_bayes_exponentialGrowth_frequency | Man page Source code |
| hier_bayes_exponentialGrowth_frequency.summary | Source code |
| hier_bayes_pairwiseLogistic_frequency | Man page Source code |
| logistic_growth_stat2 | Source code |
| matched_sample | Man page Source code |
| matched_sample2 | Man page Source code |
| mutations_plots | Man page Source code |
| plot_cluster_sizes | Source code |
| plot_maps | Man page Source code |
| plpg | Man page Source code |
| recurrent_mutations | Man page Source code |
| report_table | Man page Source code |
| sample_lineage | Man page Source code |
| scanner2 | Man page Source code |
| scanner_output | Man page Source code |
| sim_cluster_growth | Man page Source code |
| sim_growthinference_hierbayes | Source code |
| sim_growthinference_map | Source code |
| sim_importation_time | Man page Source code |
| sim_inference_clusterwise_logistic | Source code |
| sim_powerDetectionPrevalence_logisticGrowth | Man page Source code |
| sim_replicate | Man page Source code |
| sim_replicate1 | Source code |
| sim_replicate2 | Man page Source code |
| sim_replicate3 | Man page Source code |
| sim_sampling_cluster | Man page Source code |
| summary.mcmc | Source code |
| summary.mcmclist | Source code |
| variable_frequency_day | Source code |
| variable_frequency_day_report | Man page Source code |
| variable_frequency_epiweek | Man page Source code |
| variantAnalysis | Man page |
| variantAnalysis-package | Man page |
