plpg: Performs a simple logistic model fit and make a frequency...

In emvolz-phylodynamics/variantAnalysis: sarscov2 variant analysis

Description

genotype has two values: 'ancestral'(or 'wt') and mutant

Usage

plpg(
  s1,
  bw = 1,
  cols = c(ancestral = "white", mutant = "black"),
  g = 365/6.5,
  RD = seq(1.1, 1.5, length = 100),
  gentime = 6.5/365,
  timeScaleMethod = c("gentime", "growth")
)

Arguments

s1	data frame with columns genotype and sample_time
bw	bin width for aggregating data
cols	Colours for plotting

emvolz-phylodynamics/variantAnalysis documentation built on Nov. 13, 2021, 7:16 p.m.