sim_powerDetectionPrevalence_logisticGrowth: Simple power calculation for detecting growth of variant with...

In emvolz-phylodynamics/variantAnalysis: sarscov2 variant analysis

Description

This does not account for possible confounders such as importation, changing Rt, outbreaks etc

Usage

sim_powerDetectionPrevalence_logisticGrowth(
  selcoef = 0.25,
  nperday = 10,
  alpha = 0.05,
  Tg = 6.5,
  mindays = 31,
  maxdays = 240,
  init_freq = 1e-04,
  nreplicates = 5
)

Arguments

selcoef	selection coefficient (per generation)
nperday	samples per day within region
alpha	Signif threshold for detection
Tg	generation time (days)
mindays	min days to search for possible detection
maxdays	max days to search for possible detection
init_freq	Initial frequency of variant (impacts computation, will not usually need to change this)
nreplicates	Results averaged over this many replicates

emvolz-phylodynamics/variantAnalysis documentation built on Nov. 13, 2021, 7:16 p.m.