cluster_origin_comparison2: Compute cumulative proportion of samples descended from...

Description Usage Arguments Value

View source: R/frequency0.R

Description

This returns a data frame with lieange log odds broken down by epi week

Usage

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cluster_origin_comparison2(
  s,
  uk_lineage = NULL,
  genotype = NULL,
  mint = decimal_date(as.Date("2020-07-01")),
  maxt = Inf,
  detailed = TRUE
)

Arguments

s

data frame with del_introduction(character), sample_time(numeric), and epi_week (integer)

uk_lineage

optional character vector of uk_lineage

mint

lower sample time bound. Clusters must have sample before this time

maxt

upper sample time bound. Clusters must have sample after this time

Value

data frame with log odds of new lineages or uk_lineage


emvolz-phylodynamics/variantAnalysis documentation built on Nov. 13, 2021, 7:16 p.m.